home>research>people>directory> Xiaoyu Liu (Ms)

Ms Xiaoyu Liu

  • PhD Student, The University Of Western Australia
  • group: Millar

Research:

Use the techniques of bioorthogonal noncanonical amino acid tagging (BONCAT) and click-chemistry to tag and enrich nascent proteins in plants. This project will be focused on linking enzyme turnover rate and function. It will track age, activity and protein modification state for selected enzymes that are important for crop productivity.

Contact Info:

Year Publication Online
2023
Buckberry S, Liu X, Poppe D, Tan JP, Sun G, Chen J, Nguyen TV, De Mendoza A, Pflueger J, Frazer T, Vargas-Landín DB, Paynter JM, Smits N, Liu N, Ouyang JF, Rossello FJ, Chy HS, Rackham OJL, Laslett AL, Breen J, Faulkner GJ, Nefzger CM, Polo JM, Lister R (2023) Transient naive reprogramming corrects hiPS cells functionally and epigenetically. Nature 620(7975):863-872.
NCBI Pubmed DOI Link
2021
Liu X, Tan JP, Schröder J, Aberkane A, Ouyang JF, Mohenska M, Lim SM, Sun YBY, Chen J, Sun G, Zhou Y, Poppe D, Lister R, Clark AT, Rackham OJL, Zenker J, Polo JM (2021) Modelling human blastocysts by reprogramming fibroblasts into iBlastoids. NATURE 591(7851):627-632.
NCBI Pubmed DOI Link
2021
Grubman A, Choo XY, Chew G, Ouyang JF, Sun G, Croft NP, Rossello FJ, Simmons R, Buckberry S, Landin DV, Pflueger J, Vandekolk TH, Abay Z, Zhou Y, Liu X, Chen J, Larcombe M, Haynes JM, McLean C, Williams S, Chai SY, Wilson T, Lister R, Pouton CW, Purcell AW, Rackham OJL, Petretto E, Polo JM (2021) Transcriptional signature in microglia associated with Aβ plaque phagocytosis. NAT COMMUN 12(1):3015.
NCBI Pubmed DOI Link
2020
Knaupp AS, Mohenska M, Larcombe MR, Ford E, Lim SM, Wong K, Chen J, Firas J, Huang C, Liu X, Nguyen T, Sun YBY, Holmes ML, Tripathi P, Pflueger J, Rossello FJ, Schröder J, Davidson KC, Nefzger CM, Das PP, Haigh JJ, Lister R, Schittenhelm RB, Polo JM (2020) TINC- A Method to Dissect Regulatory Complexes at Single-Locus Resolution- Reveals an Extensive Protein Complex at the Nanog Promoter. STEM CELL REPORTS 15(6):1246-1259.
NCBI Pubmed DOI Link
2020
Liu X, Ouyang JF, Rossello FJ, Tan JP, Davidson KC, Valdes DS, Schröder J, Sun YBY, Chen J, Knaupp AS, Sun G, Chy HS, Huang Z, Pflueger J, Firas J, Tano V, Buckberry S, Paynter JM, Larcombe MR, Poppe D, Choo XY, O'Brien CM, Pastor WA, Chen D, Leichter AL, Naeem H, Tripathi P, Das PP, Grubman A, Powell DR, Laslett AL, David L, Nilsson SK, Clark AT, Lister R, Nefzger CM, Martelotto LG, Rackham OJL, Polo JM (2020) Reprogramming roadmap reveals route to human induced trophoblast stem cells. NATURE 586(7827):101-107.
NCBI Pubmed DOI Link
2018
Li FW, Brouwer P, Carretero-Paulet L, Cheng S, De Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, Depamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, Mcdowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van De Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM (2018) Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nat Plants 4(7):460-472.
NCBI Pubmed DOI Link
2018
Han Y, Yin S, Huang L, Wu X, Zeng J, Liu X, Qiu L, Munns R, Chen ZH, Zhang G (2018) A Sodium Transporter HvHKT1;1 Confers Salt Tolerance in Barley via Regulating Tissue and Cell Ion Homeostasis. PLANT CELL PHYSIOL 59(10):1976-1989.
NCBI Pubmed DOI Link
2017
Liu X, Nefzger CM, Rossello FJ, Chen J, Knaupp AS, Firas J, Ford E, Pflueger J, Paynter JM, Chy HS, O'Brien CM, Huang C, Mishra K, Hodgson-Garms M, Jansz N, Williams SM, Blewitt ME, Nilsson SK, Schittenhelm RB, Laslett AL, Lister R, Polo JM (2017) Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming. NAT METHODS 14(11):1055-1062.
NCBI Pubmed DOI Link
2017
Nefzger CM, Rossello FJ, Chen J, Liu X, Knaupp AS, Firas J, Paynter JM, Pflueger J, Buckberry S, Lim SM, Williams B, Alaei S, Faye-Chauhan K, Petretto E, Nilsson SK, Lister R, Ramialison M, Powell DR, Rackham OJL, Polo JM (2017) Cell Type of Origin Dictates the Route to Pluripotency. CELL REP 21(10):2649-2660.
NCBI Pubmed DOI Link
2016
Cheng S, Gutmann B, Zhong X, Ye Y, Fisher MF, Bai F, Castleden I, Song Y, Song B, Huang J, Liu X, Xu X, Lim BL, Bond CS, Yiu SM, Small I (2016) Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants. PLANT J. 85(4):532-47.
NCBI Pubmed DOI Link
2016
Liu Y, Yu L, Qu Y, Chen J, Liu X, Hong H, Liu Z, Chang R, Gilliham M, Qiu L, Guan R (2016) GmSALT3, Which Confers Improved Soybean Salt Tolerance in the Field, Increases Leaf Cl(-) Exclusion Prior to Na(+) Exclusion But Does Not Improve Early Vigor under Salinity. FRONT PLANT SCI 7:1485.
NCBI Pubmed DOI Link
2011
Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A (2011) Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. NATURE 473(7347):39.
NCBI Pubmed DOI Link
user id: 583