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Dr Daniel Poppe

  • Research Associate, The University Of Western Australia
  • group: lister

Research:

Generation of mature human neurons in cell culture by combination of different culture systems, optogenetics and genetic manipulation to investigate the neuronal epigenome.

Contact Info:

Year Publication Online
2024
Swain T, Pflueger C, Freytag S, Poppe D, Pflueger J, Nguyen TV, Li JK, Lister R (2024) A modular dCas9-based recruitment platform for combinatorial epigenome editing. Nucleic Acids Res 52(1):474-491.
NCBI Pubmed DOI Link
2023
Buckberry S, Liu X, Poppe D, Tan JP, Sun G, Chen J, Nguyen TV, De Mendoza A, Pflueger J, Frazer T, Vargas-Landín DB, Paynter JM, Smits N, Liu N, Ouyang JF, Rossello FJ, Chy HS, Rackham OJL, Laslett AL, Breen J, Faulkner GJ, Nefzger CM, Polo JM, Lister R (2023) Transient naive reprogramming corrects hiPS cells functionally and epigenetically. Nature 620(7975):863-872.
NCBI Pubmed DOI Link
2023
Martin S, Poppe D, Olova N, O'Leary C, Ivanova E, Pflueger J, Dechka J, Simmons RK, Cooper HM, Reik W, Lister R, Wolvetang EJ (2023) Embryonic Stem Cell-Derived Neurons as a Model System for Epigenome Maturation during Development. Genes (Basel) 14(5):.
NCBI Pubmed DOI Link
2022
De Mendoza A, Nguyen TV, Ford E, Poppe D, Buckberry S, Pflueger J, Grimmer MR, Stolzenburg S, Bogdanovic O, Oshlack A, Farnham PJ, Blancafort P, Lister R (2022) Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability. Genome Biol 23(1):163.
NCBI Pubmed DOI Link
2022
Herring CA, Simmons RK, Freytag S, Poppe D, Moffet JJD, Pflueger J, Buckberry S, Vargas-Landin DB, Clément O, Echeverría EG, Sutton GJ, Alvarez-Franco A, Hou R, Pflueger C, Mcdonald K, Polo JM, Forrest ARR, Nowak AK, Voineagu I, Martelotto L, Lister R (2022) Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution. Cell 185(23):4428-4447.e28.
NCBI Pubmed DOI Link
2021
De Mendoza A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T, Bertrand S, De La Calle-Mustienes E, Gómez-Skarmeta JL, Nery JR, Ecker JR, Baer B, Ragsdale CW, Grützner F, Escriva H, Venkatesh B, Bogdanovic O, Lister R (2021) The emergence of the brain non-CpG methylation system in vertebrates. Nat Ecol Evol 5(3):369-378.
NCBI Pubmed DOI Link
2021
Liu X, Tan JP, Schröder J, Aberkane A, Ouyang JF, Mohenska M, Lim SM, Sun YBY, Chen J, Sun G, Zhou Y, Poppe D, Lister R, Clark AT, Rackham OJL, Zenker J, Polo JM (2021) Modelling human blastocysts by reprogramming fibroblasts into iBlastoids. NATURE 591(7851):627-632.
NCBI Pubmed DOI Link
2020
Martin S, Poppe D, Olova N, O'Leary C, Ivanova E, Pflueger J, Dechka J, Simmons RK, Cooper HM, Reik W, Lister R, Wolvetang EJ (2020) Conserved and divergent features of DNA methylation in embryonic stem cell-derived neurons BIORXIV
DOI Link
2020
Denisenko E, Guo BB, Jones M, Hou R, de Kock L, Lassmann T, Poppe D, Clément O, Simmons RK, Lister R, Forrest ARR (2020) Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows. GENOME BIOL 21(1):130.
NCBI Pubmed DOI Link
2020
Liu X, Ouyang JF, Rossello FJ, Tan JP, Davidson KC, Valdes DS, Schröder J, Sun YBY, Chen J, Knaupp AS, Sun G, Chy HS, Huang Z, Pflueger J, Firas J, Tano V, Buckberry S, Paynter JM, Larcombe MR, Poppe D, Choo XY, O'Brien CM, Pastor WA, Chen D, Leichter AL, Naeem H, Tripathi P, Das PP, Grubman A, Powell DR, Laslett AL, David L, Nilsson SK, Clark AT, Lister R, Nefzger CM, Martelotto LG, Rackham OJL, Polo JM (2020) Reprogramming roadmap reveals route to human induced trophoblast stem cells. NATURE 586(7827):101-107.
NCBI Pubmed DOI Link
2019
Grubman A, Chew G, Ouyang JF, Sun G, Choo XY, McLean C, Simmons RK, Buckberry S, Vargas-Landin DB, Poppe D, Pflueger J, Lister R, Rackham OJL, Petretto E, Polo JM (2019) A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation. NAT. NEUROSCI. 22(12):2087-2097.
NCBI Pubmed DOI Link
2019
Denisenko E, Guo BB, Jones M, Hou R, Kock LD, Lassmann T, Poppe D, Clement O, Simmons RK, Lister R, Forrest AR (2019) Systematic bias assessment in solid tissue 10x scRNA-seq workflows BIORXIV
DOI Link
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