|
2025
|
Khan MA, Herring G, Zhu JY, Oliva M, Fourie E, Johnston B, Zhang Z, Potter J, Pineda L, Pflueger J, Swain T, Pflueger C, Lloyd JPB, Secco D, Small I, Kidd BN, Lister R
(2025)
CRISPRi-based circuits to control gene expression in plants.
Nature Biotechnology
43(3):416-430.
|
|
|
2025
|
Gaju O, Bloomfield KJ, Negrini ACA, Bowerman AF, Cullerne D, Posch BC, Bryant C, Fan Y, Spence M, Stone B, Gilliham M, Furbank RT, Molero G, Pogson BJ, Mathews K, Millar AH, Pearson AL, Reynolds MP, Stroeher E, Taylor NL, Turnbull MH, Atkin OK
(2025)
Accounting for the impact of genotype and environment on variation in leaf respiration of wheat in Mexico and Australia.
Journal of Experimental Botany
76(4):1099-1115.
|
|
|
2025
|
Tuckey AJ, Waters MT
(2025)
Branching out: Nitrogen-dependent modulation of strigolactone signaling.
Molecular Plant
18(1):14-16.
|
|
|
2025
|
Wijeweera S, Duncan O, Millar AH
(2025)
Spatial and development responses in the wheat leaf highlight the loss of chloroplast protein homeostasis during salt stress.
Journal of Proteomics
316:105438.
|
|
|
2025
|
Yang X, Li G, Shi J, Wilkinson LG, Aubert MK, Houston K, Shirley NJ, Gao H, Lister R, Colombo L, Tucker MR
(2025)
Author Correction: MADS31 supports female germline development by repressing the post-fertilization programme in cereal ovules.
Nature Plants
11(3):661.
|
|
|
2025
|
Yang X, Li G, Shi J, Wilkinson LG, Aubert MK, Houston K, Shirley NJ, Gao H, Lister R, Colombo L, Tucker MR
(2025)
MADS31 supports female germline development by repressing the post-fertilization programme in cereal ovules.
Nature Plants
11(3):543-560.
|
|
|
2025
|
Khan A, Lister R
(2025)
Synthetic gene circuits in plants: recent advances and challenges.
Quant Plant Biol
6:e6.
|
|
|
2025
|
Lloyd JPB, Khan A, Lister R
(2025)
The switch-liker's guide to plant synthetic gene circuits.
The Plant Journal
121(5):e70090.
|
|
|
2025
|
Saha S, Parlar S, Meyer EH, Murcha MW
(2025)
The complex I subunit B22 contains a LYR domain that is crucial for an interaction with the mitochondrial acyl carrier protein SDAP1.
The Plant Journal
121(4):e70028.
|
|
|
2025
|
Haywood J, Breese KJ, Jordi Muria-Gonzalez M, Bernath-Levin K, Waters M, Stubbs KA, Mylne JS
(2025)
A Non-Volatile Pro-Dicamba Herbicide Inspired by Meclofenoxate.
Chemistry
31(15):e202404282.
|
|
|
2025
|
Kamran M, Waters MT
(2025)
Engineering crop resilience with synthetic gene circuits.
Trends in Plant Science
(in press).
|
|
|
2025
|
Lenzen B, Rösch F, Legen J, Ruwe H, Kachariya N, Sattler M, Small I, Schmitz-Linneweber C
(2025)
The chloroplast RNA-binding protein CP29A supports <i>rbcL</i> expression during cold acclimation.
Proceedings of the National Academy of Sciences of the United States of America
122(5):e2403969122.
|
|
|
2024
|
Kwok Van Der Giezen FM, Viljoen A, Campbell-Clause L, Dao NT, Colas Des Francs-Small C, Small I
(2024)
Insights into U-to-C RNA editing from the lycophyte Phylloglossum drummondii.
The Plant Journal
119(1):445-459.
|
|
|
2024
|
Yang F, Vincis Pereira Sanglard L, Lee CP, Ströher E, Singh S, Oh GGK, Millar AH, Small I, Colas Des Francs-Small C
(2024)
Mitochondrial atp1 mRNA knockdown by a custom-designed pentatricopeptide repeat protein alters ATP synthase.
Plant Physiology
194(4):2631-2647.
|
|
|
2024
|
Kwok Van Der Giezen F, Honkanen S, Colas Des Francs-Small C, Bond C, Small I
(2024)
Applications of Synthetic Pentatricopeptide Repeat Proteins.
Plant and Cell Physiology
65(4):503-515.
|
|
|
2024
|
Swain T, Pflueger C, Freytag S, Poppe D, Pflueger J, Nguyen TV, Li JK, Lister R
(2024)
A modular dCas9-based recruitment platform for combinatorial epigenome editing.
Nucleic Acids Research
52(1):474-491.
|
|
|
2024
|
Melville KT, Kamran M, Yao J, Costa M, Holland M, Taylor NL, Fritz G, Flematti GR, Waters MT
(2024)
Perception of butenolides by Bacillus subtilis via the α/β hydrolase RsbQ.
Current Biology
34(3):623-631.e6.
|
|
|
2024
|
Mcquinn RP, Waters MT
(2024)
Apocarotenoid signals in plant development and beyond.
Journal of Experimental Botany
75(4):1131-1133.
|
|
|
2024
|
Kamran M, Melville KT, Waters MT
(2024)
Karrikin signalling: impacts on plant development and abiotic stress tolerance.
Journal of Experimental Botany
75(4):1174-1186.
|
|
|
2024
|
Considine MJ, Foyer CH
(2024)
Redox regulation of meristem quiescence: outside/in.
Journal of Experimental Botany
75(19):6037-6046.
|
|
|
2024
|
Salo W, Considine JA, Considine MJ
(2024)
Influence of mixed and single infection of grapevine leafroll-associated viruses and viral load on berry quality.
Tree Physiology
44(5):.
|
|
|
2024
|
Jia Y, Barrero JM, Wang J, Considine MJ, Nakamura S, Li C
(2024)
Editorial: Seed dormancy, germination, and pre-harvest sprouting, volume II.
Frontiers in Plant Science
15:1399510.
|
|
|
2024
|
Olasz B, Smithers L, Evans GL, Anandan A, Murcha MW, Vrielink A
(2024)
Structural analysis of the SAM domain of the Arabidopsis mitochondrial tRNA import receptor.
The Journal of Biological Chemistry
300(5):107258.
|
|
|
2024
|
Coast O, Scafaro AP, Bramley H, Taylor NL, Atkin OK
(2024)
Photosynthesis in newly developed leaves of heat-tolerant wheat acclimates to long-term nocturnal warming.
Journal of Experimental Botany
75(3):962-978.
|
|
|
2024
|
Fuchs P, Feixes-Prats E, Arruda P, Feitosa-Araújo E, Fernie AR, Grefen C, Lichtenauer S, Linka N, De Godoy Maia I, Meyer AJ, Schilasky S, Sweetlove LJ, Wege S, Weber APM, Millar AH, Keech O, Florez-Sarasa I, Barreto P, Schwarzländer M
(2024)
PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 2 localizes to the Golgi.
Plant Physiology
194(2):623-628.
|
|
|
2024
|
Fan Y, Tcherkez G, Scafaro AP, Taylor NL, Furbank RT, Von Caemmerer S, Atkin OK
(2024)
Variation in leaf dark respiration among C3 and C4 grasses is associated with use of different substrates.
Plant Physiology
195(2):1475-1490.
|
|
|
2024
|
Dissanayake BM, Staudinger C, Ranathunge K, Munns R, Rupasinghe TW, Taylor NL, Millar AH
(2024)
Metabolic adaptations leading to an enhanced lignification in wheat roots under salinity stress.
Plant J
119(4):1800-1815.
|
|
|
2024
|
Song C, Li Y, Yang M, Li T, Hou Y, Liu Y, Xu C, Liu J, Millar AH, Wang N, Li L
(2024)
Protein aggregation in plant mitochondria lacking Lon1 inhibits translation and induces unfolded protein responses.
Plant Cell Environ
47(11):4383-4397.
|
|
|
2024
|
Stuart T, Buckberry S, Nguyen TV, Lister R
(2024)
Approaches for the Analysis and Interpretation of Whole-Genome Bisulfite Sequencing Data.
Methods Mol Biol
2842:391-403.
|
|
|
2024
|
Vargas-Landin DB, Pflüger J, Nguyen TV, Lister R
(2024)
Generation of Whole-Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis.
Methods Mol Biol
2842:383-390.
|
|
|
2024
|
Eckardt NA, Avin-Wittenberg T, Bassham DC, Chen P, Chen Q, Fang J, Genschik P, Ghifari AS, Guercio AM, Gibbs DJ, Heese M, Jarvis RP, Michaeli S, Murcha MW, Mursalimov S, Noir S, Palayam M, Peixoto B, Rodriguez PL, Schaller A, Schnittger A, Serino G, Shabek N, Stintzi A, Theodoulou FL, Üstün S, Van Wijk KJ, Wei N, Xie Q, Yu F, Zhang H
(2024)
The lowdown on breakdown: Open questions in plant proteolysis.
Plant Cell
36(9):2931-2975.
|
|
|
2024
|
Chenoweth JG, Colantuoni C, Striegel DA, Genzor P, Brandsma J, Blair PW, Krishnan S, Chiyka E, Fazli M, Mehta R, Considine M, Cope L, Knight AC, Elayadi A, Fox A, Hertzano R, Letizia AG, Owusu-Ofori A, Boakye I, Aduboffour AA, Ansong D, Biney E, Oduro G, Schully KL, Clark DV
(2024)
Gene expression signatures in blood from a West African sepsis cohort define host response phenotypes.
Nat Commun
15(1):4606.
|
|
|
2024
|
Li H, Wang XM, Chen L, Ahammed GJ, Xia XJ, Shi K, Considine MJ, Yu JQ, Zhou YH
(2024)
Corrigendum to "Growth temperature-induced changes in biomass accumulation, photosynthesis and glutathione redox homeostasis as influenced by hydrogen peroxide in cucumber" [Plant Physiol. Biochem. 71(2013) 1-10].
Plant Physiol Biochem
213:108861.
|
|
|
2024
|
Lee CP, Le XH, Gawryluk RMR, Casaretto JA, Rothstein SJ, Millar AH
(2024)
EARLY NODULIN93 acts via cytochrome c oxidase to alter respiratory ATP production and root growth in plants.
Plant Cell
36(11):4716-4731.
|
|
|
2024
|
Nicolas-Martinez EC, Robinson O, Pflueger C, Gardner A, Corbett MA, Ritchie T, Kroes T, Van Eyk CL, Scheffer IE, Hildebrand MS, Barnier JV, Rousseau V, Genevieve D, Haushalter V, Piton A, Denommé-Pichon AS, Bruel AL, Nambot S, Isidor B, Grigg J, Gonzalez T, Ghedia S, Marchant RG, Bournazos A, Wong WK, Webster RI, Evesson FJ, Jones KJ, Cooper ST, Lister R, Gecz J, Jolly LA
(2024)
RNA variant assessment using transactivation and transdifferentiation.
Am J Hum Genet
111(8):1673-1699.
|
|
|
2024
|
Arias-Sibillotte M, Considine MJ, Signorelli S
(2024)
Reinterpreting olive bud dormancy.
J Exp Bot
75(19):6017-6021.
|
|
|
2024
|
Cahn J, Lloyd JPB, Karemaker ID, Jansen PWTC, Pflueger J, Duncan O, Petereit J, Bogdanovic O, Millar AH, Vermeulen M, Lister R
(2024)
Characterization of DNA methylation reader proteins in <i>Arabidopsis thaliana</i>.
Genome Research
34(12):2229-2243.
|
|
|
2024
|
Liew LC, You Y, Auroux L, Oliva M, Peirats-Llobet M, Ng S, Tamiru-Oli M, Berkowitz O, Hong UVT, Haslem A, Stuart T, Ritchie ME, Bassel GW, Lister R, Whelan J, Gouil Q, Lewsey MG
(2024)
Establishment of single-cell transcriptional states during seed germination.
Nature Plants
10(9):1418-1434.
|
|
|
2024
|
Bestry M, Larcombe AN, Kresoje N, Chivers EK, Bakker C, Fitzpatrick JP, Elliott EJ, Craig JM, Muggli E, Halliday J, Hutchinson D, Buckberry S, Lister R, Symons M, Martino D
(2024)
Early moderate prenatal alcohol exposure and maternal diet impact offspring DNA methylation across species.
eLIFE
12:.
|
|
|
2024
|
Debeljak M, Cho S, Downs BM, Considine M, Avin-Mckelvey B, Wang Y, Perez PN, Grizzle WE, Hoadley KA, Lynch CF, Hernandez BY, Van Diest PJ, Cozen W, Hamilton AS, Hawes D, Gabrielson E, Cimino-Mathews A, Florea LD, Cope L, Umbricht CB
(2024)
Multimodal genome-wide survey of progressing and non-progressing breast ductal carcinoma in-situ.
Breast Cancer Res
26(1):178.
|
|
|
2024
|
Considine MJ
(2024)
Quiescence and dormancy underpin plasticity and resilience: the virtue of being idle.
Journal of Experimental Botany
75(19):6007-6010.
|
|
|
2024
|
Godet I, Oza HH, Shi Y, Joe NS, Weinstein AG, Johnson J, Considine M, Talluri S, Zhang J, Xu R, Doctorman S, Mbulaiteye D, Stein-O'Brien G, Kagohara LT, Santa-Maria CA, Fertig EJ, Gilkes DM
(2024)
Hypoxia induces ROS-resistant memory upon reoxygenation in vivo promoting metastasis in part via MUC1-C.
Nature Communications
15(1):8416.
|
|
|
2024
|
Marzano N, Johnston B, Paudel BP, Schmidberger J, Jergic S, Böcking T, Agostino M, Small I, Van Oijen AM, Bond CS
(2024)
Single-molecule visualization of sequence-specific RNA binding by a designer PPR protein.
Nucleic Acids Research
52(22):14154-14170.
|
|
|
2023
|
Best C, Mizrahi R, Edris R, Tang H, Zer H, Colas Des Francs-Small C, Finkel OM, Zhu H, Small ID, Ostersetzer-Biran O
(2023)
MSP1 encodes an essential RNA-binding pentatricopeptide repeat factor required for nad1 maturation and complex I biogenesis in Arabidopsis mitochondria.
The New phytologist
238(6):2375-2392.
|
|
|
2023
|
Edera AA, Howell KA, Nevill PG, Small I, Sanchez-Puerta MV
(2023)
Evolution of cox2 introns in angiosperm mitochondria and efficient splicing of an elongated cox2i691 intron.
Gene
869:147393.
|
|
|
2023
|
Small I, Melonek J, Bohne AV, Nickelsen J, Schmitz-Linneweber C
(2023)
Plant organellar RNA maturation.
The Plant Cell
35(6):1727-1751.
|
|
|
2023
|
Huynh SD, Melonek J, Colas Des Francs-Small C, Bond CS, Small I
(2023)
A unique C-terminal domain contributes to the molecular function of Restorer-of-fertility proteins in plant mitochondria.
The New phytologist
240(2):830-845.
|
|
|
2023
|
Castaños CE, Boyce MC, Bates T, Millar AH, Flematti G, Lawler NG, Grassl J
(2023)
Lipidomic features of honey bee and colony health during limited supplementary feeding.
Insect Molecular Biology
32(6):658-675.
|
|
|
2023
|
Vincis Pereira Sanglard L, Small ID, Colas Des Francs-Small C
(2023)
Alteration of Mitochondrial Transcript Expression in <i>Arabidopsis thaliana</i> Using a Custom-Made Library of Pentatricopeptide Repeat Proteins.
International Journal of Molecular Sciences
24(17):.
|
|
|
2023
|
Garcia A, Gaju O, Bowerman AF, Buck SA, Evans JR, Furbank RT, Gilliham M, Millar AH, Pogson BJ, Reynolds MP, Ruan YL, Taylor NL, Tyerman SD, Atkin OK
(2023)
Enhancing crop yields through improvements in the efficiency of photosynthesis and respiration.
The New phytologist
237(1):60-77.
|
|
|
2023
|
Hanson AD, Millar AH, Nikoloski Z, Way DA
(2023)
Focus on respiration.
Plant Physiology
191(4):2067-2069.
|
|
|
2023
|
Munns R, Millar AH
(2023)
Seven plant capacities to adapt to abiotic stress.
Journal of Experimental Botany
74(15):4308-4323.
|
|
|
2023
|
Oh GGK, Kumari V, Millar AH, O'Leary BM
(2023)
Alternative oxidase 1a and 1d enable metabolic flexibility during Ala catabolism in Arabidopsis.
Plant Physiology
192(4):2958-2970.
|
|
|
2023
|
Nobori T, Oliva M, Lister R, Ecker JR
(2023)
Multiplexed single-cell 3D spatial gene expression analysis in plant tissue using PHYTOMap.
Nature Plants
9(7):1026-1033.
|
|
|
2023
|
Hermawaty D, Cahn J, Lister R, Considine MJ
(2023)
Systematic evaluation of chromatin immunoprecipitation sequencing to study histone occupancy in dormancy transitions of grapevine buds.
Tree Physiology
43(4):675-689.
|
|
|
2023
|
Buckberry S, Liu X, Poppe D, Tan JP, Sun G, Chen J, Nguyen TV, De Mendoza A, Pflueger J, Frazer T, Vargas-Landín DB, Paynter JM, Smits N, Liu N, Ouyang JF, Rossello FJ, Chy HS, Rackham OJL, Laslett AL, Breen J, Faulkner GJ, Nefzger CM, Polo JM, Lister R
(2023)
Transient naive reprogramming corrects hiPS cells functionally and epigenetically.
Nature
620(7975):863-872.
|
|
|
2023
|
Martin S, Poppe D, Olova N, O'Leary C, Ivanova E, Pflueger J, Dechka J, Simmons RK, Cooper HM, Reik W, Lister R, Wolvetang EJ
(2023)
Embryonic Stem Cell-Derived Neurons as a Model System for Epigenome Maturation during Development.
Genes (Basel)
14(5):.
|
|
|
2023
|
Le XH, Millar AH
(2023)
The diversity of substrates for plant respiration and how to optimize their use.
Plant Physiology
191(4):2133-2149.
|
|
|
2023
|
Byrt CS, Millar AH, Munns R
(2023)
Staple crops equipped for alkaline soils.
Nature Biotechnology
41(7):911-912.
|
|
|
2023
|
Ghifari AS, Ivanova A, Berkowitz O, Whelan J, Murcha MW
(2023)
FTSH PROTEASE 3 facilitates Complex I degradation through a direct interaction with the Complex I subunit PSST.
The Plant Cell
35(8):3092-3108.
|
|
|
2023
|
Oliva M, Lister R
(2023)
Exploring the identity of individual plant cells in space and time.
The New phytologist
240(1):61-67.
|
|
|
2023
|
Lee HN, Chacko JV, Gonzalez Solís A, Chen KE, Barros JAS, Signorelli S, Millar AH, Vierstra RD, Eliceiri KW, Otegui MS
(2023)
The autophagy receptor NBR1 directs the clearance of photodamaged chloroplasts.
eLIFE
12:.
|
|
|
2023
|
Waters MT, Nelson DC
(2023)
Karrikin perception and signalling.
The New phytologist
237(5):1525-1541.
|
|
|
2022
|
Honkanen S, Small I
(2022)
The GENOMES UNCOUPLED1 protein has an ancient, highly conserved role but not in retrograde signalling.
The New phytologist
236(1):99-113.
|
|
|
2022
|
Melonek J, Small I
(2022)
Triticeae genome sequences reveal huge expansions of gene families implicated in fertility restoration.
Current Opinion in Plant Biology
66():102166.
|
|
|
2022
|
Mcdowell R, Small I, Bond CS
(2022)
Synthetic PPR proteins as tools for sequence-specific targeting of RNA.
Methods (San Diego, Calif.)
208:19-26.
|
|
|
2022
|
Bikaun JM, Bates T, Bollen M, Flematti GR, Melonek J, Praveen P, Grassl J
(2022)
Volatile biomarkers for non-invasive detection of American foulbrood, a threat to honey bee pollination services.
The Science of the total environment
845():157123.
|
|
|
2022
|
Nguyen VD, Sarić R, Burge T, Berkowitz O, Trtilek M, Whelan J, Lewsey MG, Čustović E
(2022)
Noninvasive imaging technologies in plant phenotyping.
Trends in Plant Science
27(3):316-317.
|
|
|
2022
|
Karpinska B, Razak N, Shaw DS, Plumb W, Van De Slijke E, Stephens J, De Jaeger G, Murcha MW, Foyer CH
(2022)
Late Embryogenesis Abundant (LEA)5 Regulates Translation in Mitochondria and Chloroplasts to Enhance Growth and Stress Tolerance.
Frontiers in Plant Science
13:875799.
|
|
|
2022
|
Gill-Hille M, Wang A, Murcha MW
(2022)
Presequence translocase-associated motor subunits of the mitochondrial protein import apparatus are dual-targeted to mitochondria and plastids.
Frontiers in Plant Science
13:981552.
|
|
|
2022
|
Li L, Duncan O, Ganguly DR, Lee CP, Crisp PA, Wijerathna-Yapa A, Salih K, Trösch J, Pogson BJ, Millar AH
(2022)
Enzymes degraded under high light maintain proteostasis by transcriptional regulation in <i>Arabidopsis</i>.
Proceedings of the National Academy of Sciences of the United States of America
119(20):e2121362119.
|
|
|
2022
|
Joshi J, Beaudoin GAW, Patterson JA, García-García JD, Belisle CE, Chang LY, Li L, Duncan O, Millar AH, Hanson AD
(2022)
Correction: Bioinformatic and experimental evidence for suicidal and catalytic plant THI4s.
Biochemical Journal
479(24):2497.
|
|
|
2022
|
Cao H, Duncan O, Millar AH
(2022)
The molecular basis of cereal grain proteostasis.
Essays Biochem
66(2):243-253.
|
|
|
2022
|
De Mendoza A, Nguyen TV, Ford E, Poppe D, Buckberry S, Pflueger J, Grimmer MR, Stolzenburg S, Bogdanovic O, Oshlack A, Farnham PJ, Blancafort P, Lister R
(2022)
Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability.
Genome Biology
23(1):163.
|
|
|
2022
|
Wang G, Wang Y, Ni J, Li R, Zhu F, Wang R, Tian Q, Shen Q, Yang Q, Tang J, Murcha MW, Wang G
(2022)
An MCIA-like complex is required for mitochondrial complex I assembly and seed development in maize.
Molecular Plant
15(9):1470-1487.
|
|
|
2022
|
Haywood J, Breese KJ, Zhang J, Waters MT, Bond CS, Stubbs KA, Mylne JS
(2022)
A fungal tolerance trait and selective inhibitors proffer HMG-CoA reductase as a herbicide mode-of-action.
Nature Communications
13(1):5563.
|
|
|
2022
|
Li L, Lee CP, Ding X, Qin Y, Wijerathna-Yapa A, Broda M, Otegui MS, Millar AH
(2022)
Defects in autophagy lead to selective in vivo changes in turnover of cytosolic and organelle proteins in Arabidopsis.
The Plant Cell
34(10):3936-3960.
|
|
|
2022
|
Ghifari AS, Teixeira PF, Kmiec B, Singh N, Glaser E, Murcha MW
(2022)
The dual-targeted prolyl aminopeptidase PAP1 is involved in proline accumulation in response to stress and during pollen development.
Journal of Experimental Botany
73(1):78-93.
|
|
|
2022
|
Li Y, Belt K, Alqahtani SF, Saha S, Fenske R, Van Aken O, Whelan J, Millar AH, Murcha MW, Huang S
(2022)
The mitochondrial LYR protein SDHAF1 is required for succinate dehydrogenase activity in Arabidopsis.
The Plant Journal
110(2):499-512.
|
|
|
2022
|
Ghifari AS, Murcha MW
(2022)
Proteolytic regulation of mitochondrial oxidative phosphorylation components in plants.
Biochemical Society transactions
50(3):1119-1132.
|
|
|
2022
|
Meng Y, Varshney K, Incze N, Badics E, Kamran M, Davies SF, Oppermann LMF, Magne K, Dalmais M, Bendahmane A, Sibout R, Vogel J, Laudencia-Chingcuanco D, Bond CS, Soós V, Gutjahr C, Waters MT
(2022)
KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular-mycorrhizal symbiosis in Brachypodium distachyon.
The Plant Journal
109(6):1559-1574.
|
|
|
2022
|
Lloyd JPB, Ly F, Gong P, Pflueger J, Swain T, Pflueger C, Fourie E, Khan MA, Kidd BN, Lister R
(2022)
Synthetic memory circuits for stable cell reprogramming in plants.
Nature Biotechnology
40(12):1862-1872.
|
|
|
2022
|
Gerdes P, Lim SM, Ewing AD, Larcombe MR, Chan D, Sanchez-Luque FJ, Walker L, Carleton AL, James C, Knaupp AS, Carreira PE, Nefzger CM, Lister R, Richardson SR, Polo JM, Faulkner GJ
(2022)
Retrotransposon instability dominates the acquired mutation landscape of mouse induced pluripotent stem cells.
Nature Communications
13(1):7470.
|
|
|
2022
|
Dissanayake BM, Staudinger C, Munns R, Taylor NL, Millar AH
(2022)
Distinct salinity-induced changes in wheat metabolic machinery in different root tissue types.
Journal of Proteomics
256:104502.
|
|
|
2022
|
Le XH, Lee CP, Monachello D, Millar AH
(2022)
Metabolic evidence for distinct pyruvate pools inside plant mitochondria.
Nature Plants
8(6):694-705.
|
|
|
2022
|
Sepulveda C, Guzmán MA, Li Q, Villaécija-Aguilar JA, Martinez SE, Kamran M, Khosla A, Liu W, Gendron JM, Gutjahr C, Waters MT, Nelson DC
(2022)
KARRIKIN UP-REGULATED F-BOX 1 (KUF1) imposes negative feedback regulation of karrikin and KAI2 ligand metabolism in <i>Arabidopsis thaliana</i>.
Proceedings of the National Academy of Sciences of the United States of America
119(11):e2112820119.
|
|
|
2022
|
Ivanova A, O Leary B, Signorelli S, Falconet D, Moyankova D, Whelan J, Djilianov D, Murcha MW
(2022)
Mitochondrial activity and biogenesis during resurrection of Haberlea rhodopensis.
The New phytologist
236(3):943-957.
|
|
|
2022
|
Herring CA, Simmons RK, Freytag S, Poppe D, Moffet JJD, Pflueger J, Buckberry S, Vargas-Landin DB, Clément O, Echeverría EG, Sutton GJ, Alvarez-Franco A, Hou R, Pflueger C, Mcdonald K, Polo JM, Forrest ARR, Nowak AK, Voineagu I, Martelotto L, Lister R
(2022)
Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution.
Cell
185(23):4428-4447.e28.
|
|
|
2021
|
Bernath-Levin K, Schmidberger J, Honkanen S, Gutmann B, Sun YK, Pullakhandam A, Colas Des Francs-Small C, Bond CS, Small I
(2021)
Cofactor-independent RNA editing by a synthetic S-type PPR protein.
Synthetic biology (Oxford, England)
7(1):ysab034.
|
|
|
2021
|
Matros A, Houston K, Tucker MR, Schreiber M, Berger B, Aubert MK, Wilkinson LG, Witzel K, Waugh R, Seiffert U, Burton RA
(2021)
Genome-wide association study reveals the genetic complexity of fructan accumulation patterns in barley grain.
Journal of Experimental Botany
72(7):2383-2402.
|
|
|
2021
|
Zhu L, Bloomfield KJ, Asao S, Tjoelker MG, Egerton JJG, Hayes L, Weerasinghe LK, Creek D, Griffin KL, Hurry V, Liddell M, Meir P, Turnbull MH, Atkin OK
(2021)
Acclimation of leaf respiration temperature responses across thermally contrasting biomes.
The New phytologist
229(3):1312-1325.
|
|
|
2021
|
Tivendale ND, Fenske R, Duncan O, Millar AH
(2021)
In vivo homopropargylglycine incorporation enables sampling, isolation and characterization of nascent proteins from Arabidopsis thaliana.
The Plant journal: for cell and molecular biology
107(4):1260-1276.
|
|
|
2021
|
Borevitz J
(2021)
Utilizing genomics to understand and respond to global climate change.
Genome Biology and Evolution
22(1):91.
|
|
|
2021
|
Pazhamala LT, Kudapa H, Weckwerth W, Millar AH, Varshney RK
(2021)
Systems biology for crop improvement.
The Plant Genome
14(2):e20098.
|
|
|
2021
|
Hanson AD, McCarty DR, Henry CS, Xian X, Joshi J, Patterson JA, García-García JD, Fleischmann SD, Tivendale ND, Millar AH
(2021)
The number of catalytic cycles in an enzyme's lifetime and why it matters to metabolic engineering.
Proceedings of the National Academy of Sciences of the United States of America
118(13):undefined.
|
|
|
2021
|
Wijerathna-Yapa A, Stroeher E, Fenske R, Li L, Duncan O, Millar AH
(2021)
Proteomics for Autophagy Receptor and Cargo Identification in Plants.
J. Proteome Research
20(1):129-138.
|
|
|
2021
|
Ye Z, Chatterton Z, Pflueger J, Damiano JA, McQuillan L, Harvey AS, Malone S, Do H, Maixner W, Schneider A, Nolan B, Wood M, Lee WS, Gillies G, Pope K, Wilson M, Lockhart PJ, Dobrovic A, Scheffer IE, Bahlo M, Leventer R, Lister R, Berkovic S, Hildebrand MS
(2021)
Cerebrospinal fluid liquid biopsy for detecting somatic mosaicism in brain
Brain Communications
|
|
|
2021
|
Xiao Z, Chin S, White RG, Gourieroux AM, Pagay V, Tyerman SD, Schmidtke LM, Rogiers SY
(2021)
Vascular Connections Into the Grape Berry: The Link of Structural Investment to Seededness.
Frontiers in Plant Science
12():662433.
|
|
|
2021
|
De Mendoza A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T, Bertrand S, De La Calle-Mustienes E, Gómez-Skarmeta JL, Nery JR, Ecker JR, Baer B, Ragsdale CW, Grützner F, Escriva H, Venkatesh B, Bogdanovic O, Lister R
(2021)
The emergence of the brain non-CpG methylation system in vertebrates.
Nature ecology & evolution
5(3):369-378.
|
|
|
2021
|
Broda M, Khan K, O'Leary B, Pružinská A, Lee CP, Millar AH, Van Aken O
(2021)
Increased expression of ANAC017 primes for accelerated senescence.
Plant Physiology
186(4):2205-2221.
|
|
|
2021
|
Nguyen TV, Lister R
(2021)
Genomic Targeting of TET Activity for Targeted Demethylation Using CRISPR/Cas9
Methods in Molecular Biology
2272:181-194.
|
|
|
2021
|
Rabanus-Wallace MT, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer KFX, Guo L, Poland J, Pozniak CJ, Walkowiak S, Melonek J, Praz CR, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler DB, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov AV, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma XF, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman AH, Siekmann D, Stojałowski S, Tiwari VK, Spannagl M, Stein N
(2021)
Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential.
Nature Genetics
53(4):564-573.
|
|
|
2021
|
David R, Menezes RD, De Klerk J, Castleden IR, Hooper CM, Carneiro G, Gilliham M
(2021)
Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network.
Scientific Reports
11(1):1696.
|
|
|
2021
|
Cowley JM, Burton RA
(2021)
The goo-d stuff: Plantago as a myxospermous model with modern utility.
The New phytologist
229(4):1917-1923.
|
|
|
2021
|
Asif MA, Garcia M, Tilbrook J, Brien C, Dowling K, Berger B, Schilling RK, Short L, Trittermann C, Gilliham M, Fleury D, Roy SJ, Pearson AS
(2021)
Identification of salt tolerance QTL in a wheat RIL mapping population using destructive and non-destructive phenotyping.
Functional Plant Biology
48(2):131-140.
|
|
|
2021
|
Mostert-O'Neill MM, Reynolds SM, Acosta JJ, Lee DJ, Borevitz JO, Myburg AA
(2021)
Genomic evidence of introgression and adaptation in a model subtropical tree species, Eucalyptus grandis.
Molecular ecology
30(3):625-638.
|
|
|
2021
|
Escobar-Tovar L, Sierra J, Hernández-Muñoz A, Mcquinn RP, Mathioni S, Cordoba E, Colas Des Francs-Small C, Meyers BC, Pogson B, León P
(2021)
Deconvoluting apocarotenoid-mediated retrograde signaling networks regulating plastid translation and leaf development.
The Plant Journal
105(6):1582-1599.
|
|
|
2021
|
Lee CP, Elsässer M, Fuchs P, Fenske R, Schwarzländer M, Millar AH
(2021)
The versatility of plant organic acid metabolism in leaves is underpinned by mitochondrial malate-citrate exchange.
The Plant Cell
33(12):3700-3720.
|
|
|
2021
|
Melonek J, Duarte J, Martin J, Beuf L, Murigneux A, Varenne P, Comadran J, Specel S, Levadoux S, Bernath-Levin K, Torney F, Pichon JP, Perez P, Small I
(2021)
The genetic basis of cytoplasmic male sterility and fertility restoration in wheat.
Nature Communications
12(1):1036.
|
|
|
2021
|
Cao H, Duncan O, Islam S, Zhang J, Ma W, Millar AH
(2021)
Increased Wheat Protein Content via Introgression of an HMW Glutenin Selectively Reshapes the Grain Proteome.
Molecular and Cellular Proteomics
20():100097.
|
|
|
2021
|
Liu X, Tan JP, Schröder J, Aberkane A, Ouyang JF, Mohenska M, Lim SM, Sun YBY, Chen J, Sun G, Zhou Y, Poppe D, Lister R, Clark AT, Rackham OJL, Zenker J, Polo JM
(2021)
Modelling human blastocysts by reprogramming fibroblasts into iBlastoids.
Nature
591(7851):627-632.
|
|
|
2021
|
Le XH, Lee CP, Millar AH
(2021)
The mitochondrial pyruvate carrier (MPC) complex mediates one of three pyruvate-supplying pathways that sustain Arabidopsis respiratory metabolism.
The Plant Cell
33(8):2776-2793.
|
|
|
2021
|
Chiconato DA, de Santana Costa MG, Balbuena TS, Munns R, Dos Santos DMM
(2021)
Proteomic analysis of young sugarcane plants with contrasting salt tolerance.
Functional Plant Biology
48(6):588-596.
|
|
|
2021
|
Tivendale ND, Belt K, Berkowitz O, Whelan J, Millar AH, Huang S
(2021)
Knockdown of Succinate Dehydrogenase Assembly Factor 2 Induces Reactive Oxygen Species-Mediated Auxin Hypersensitivity Causing pH-Dependent Root Elongation.
Plant and Cell Physiology
62(7):1185-1198.
|
|
|
2021
|
Schultz CJ, Goonetilleke SN, Liang J, Lahnstein J, Levin KA, Bianco-Miotto T, Burton RA, Mather DE, Chalmers KJ
(2021)
Analysis of Genetic Diversity in the Traditional Chinese Medicine Plant 'Kushen' (<i>Sophora flavescens</i> Ait.).
Frontiers in Plant Science
12():704201.
|
|
|
2021
|
Qu Y, Guan R, Bose J, Henderson SW, Wege S, Qiu L, Gilliham M
(2021)
Soybean CHX-type ion transport protein GmSALT3 confers leaf Na+ exclusion via a root derived mechanism, and Cl- exclusion via a shoot derived process
Plant, Cell & Environment
44(3):856-869.
|
|
|
2021
|
Sun S, Zhu J, Guo R, Whelan J, Shou H
(2021)
DNA methylation is involved in acclimation to iron-deficiency in rice (Oryza sativa).
The Plant Journal
107(3):727-739.
|
|
|
2021
|
Kawasaki A, Dennis PG, Forstner C, Raghavendra AKH, Richardson AE, Watt M, Mathesius U, Gilliham M, Ryan PR
(2021)
The microbiomes on the roots of wheat (Triticum aestivum L.) and rice (Oryza sativa L.) exhibit significant differences in structure between root types and along root axes.
Functional Plant Biology
48(9):871-888.
|
|
|
2021
|
Hani S, Cuyas L, David P, Secco D, Whelan J, Thibaud MC, Merret R, Mueller F, Pochon N, Javot H, Faklaris O, Maréchal E, Bertrand E, Nussaume L
(2021)
Live single-cell transcriptional dynamics via RNA labelling during the phosphate response in plants.
Nature Plants
7(8):1050-1064.
|
|
|
2021
|
Fabres PJ, Anand L, Sai N, Pederson S, Zheng F, Stewart AA, Clements B, Lampugnani ER, Breen J, Gilliham M, Tricker P, Rodríguez López CM, David R
(2021)
Tissue and regional expression patterns of dicistronic tRNA-mRNA transcripts in grapevine (Vitis vinifera) and their evolutionary co-appearance with vasculature in land plants
Horticulture Research
8(1):137.
|
|
|
2021
|
Royan S, Gutmann B, Colas des Francs-Small C, Honkanen S, Schmidberger J, Soet A, Sun YK, Vincis Pereira Sanglard L, Bond CS, Small I
(2021)
A synthetic RNA editing factor edits its target site in chloroplasts and bacteria.
Communications Biology
4(1):545.
|
|
|
2021
|
Jones A, Torkel C, Stanley D, Nasim J, Borevitz J, Schwessinger B
(2021)
High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing.
PLoS ONE
16(7):e0253830.
|
|
|
2021
|
Feng CZ, Luo YX, Wang PD, Gilliham M, Long Y
(2021)
MYB77 regulates high-affinity potassium uptake by promoting expression of HAK5.
The New phytologist
232(1):176-189.
|
|
|
2021
|
Tcherkez G, Atkin OK
(2021)
Unravelling mechanisms and impacts of day respiration in plant leaves: an introduction to a Virtual Issue.
The New phytologist
230(1):5-10.
|
|
|
2021
|
Li G, Kuijer HNJ, Yang X, Liu H, Shen C, Shi J, Betts N, Tucker MR, Liang W, Waugh R, Burton RA, Zhang D
(2021)
MADS1 maintains barley spike morphology at high ambient temperatures.
Nature Plants
7(8):1093-1107.
|
|
|
2021
|
Edera AA, Small ID, Milone DH, Virginia Sanchez-Puerta MV
(2021)
Deepred-Mt: Deep representation learning for predicting C-to-U RNA editing in plant mitochondria
Computers in Biology and Medicine
136:104682.
|
|
|
2021
|
Tyerman SD, Mcgaughey SA, Qiu J, Yool AJ, Byrt CS
(2021)
Adaptable and Multifunctional Ion-Conducting Aquaporins.
Annual Review of Plant Biology
72():703-736.
|
|
|
2021
|
McGaughey SA, Tyerman SD, Byrt CS
(2021)
An algal PIP-like aquaporin facilitates water transport and ionic conductance
Biochimica et Biophysica Acta (BBA) - Biomembranes
863(10):183661.
|
|
|
2021
|
Coast O, Posch BC, Bramley H, Gaju O, Richards RA, Lu M, Ruan YL, Trethowan R, Atkin OK
(2021)
Acclimation of leaf photosynthesis and respiration to warming in field-grown wheat.
Plant, Cell & Environment
44(7):2331-2346.
|
|
|
2021
|
Gutmann B, Millman M, Vincis Pereira Sanglard L, Small I, Colas des Francs-Small C
(2021)
Stem Cells International
10(2):undefined.
|
|
|
2021
|
Xu B, Long Y, Feng X, Zhu X, Sai N, Chirkova L, Betts A, Herrmann J, Edwards EJ, Okamoto M, Hedrich R, Gilliham M
(2021)
GABA signalling modulates stomatal opening to enhance plant water use efficiency and drought resilience.
Nature Communications
12(1):1952.
|
|
|
2021
|
Grubman A, Choo XY, Chew G, Ouyang JF, Sun G, Croft NP, Rossello FJ, Simmons R, Buckberry S, Landin DV, Pflueger J, Vandekolk TH, Abay Z, Zhou Y, Liu X, Chen J, Larcombe M, Haynes JM, McLean C, Williams S, Chai SY, Wilson T, Lister R, Pouton CW, Purcell AW, Rackham OJL, Petretto E, Polo JM
(2021)
Transcriptional signature in microglia associated with Aβ plaque phagocytosis.
Nature Communications
12(1):3015.
|
|
|
2021
|
Reynolds M, Atkin OK, Bennett M, Cooper M, Dodd IC, Foulkes MJ, Frohberg C, Hammer G, Henderson IR, Huang B, Korzun V, McCouch SR, Messina CD, Pogson BJ, Slafer GA, Taylor NL, Wittich PE
(2021)
Addressing Research Bottlenecks to Crop Productivity.
Trends in Plant Science
26(6):607-630.
|
|
|
2021
|
Berkowitz O, Xu Y, Liew LC, Wang Y, Zhu Y, Hurgobin B, Lewsey MG, Whelan J
(2021)
RNA-seq analysis of laser microdissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue-specific transcriptional responses to multiple stress treatments.
The Plant Journal
107(3):938-955.
|
|
|
2021
|
Wege S, Qiu J, Byrt C, Houston K, Waugh R, Gilliham M, Hrmova M
(2021)
A single residue deletion in the barley HKT1;5 P189 variant restores plasma membrane localisation but not Na+ conductance
Biochimica et Biophysica Acta (BBA) - Biomembranes
1863(10).
|
|
|
2021
|
Scafaro AP, Fan Y, Posch BC, Garcia A, Coast O, Atkin OK
(2021)
Responses of leaf respiration to heatwaves.
Plant, Cell & Environment
44(7):2090-2101.
|
|
|
2021
|
Cowley JM, O'Donovan LA, Burton RA
(2021)
The composition of Australian Plantago seeds highlights their potential as nutritionally-rich functional food ingredients.
Scientific Reports
11(1):12692.
|
|
|
2021
|
Wijerathna-Yapa A, Signorelli S, Fenske R, Ganguly DR, Stroeher E, Li L, Pogson BJ, Duncan O, Millar AH
(2021)
Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions.
The Plant Journal
108(2):459-477.
|
|
|
2021
|
Yao J, Scaffidi A, Meng Y, Melville KT, Komatsu A, Khosla A, Nelson DC, Kyozuka J, Flematti GR, Waters MT
(2021)
Desmethyl butenolides are optimal ligands for karrikin receptor proteins.
The New phytologist
230(3):1003-1016.
|
|
|
2020
|
O'Leary BM
(2020)
The Plant Cell
32(7):2077-2078.
|
|
|
2020
|
Watkins JL, Pogson BJ
(2020)
Prospects for Carotenoid Biofortification Targeting Retention and Catabolism.
Trends in Plant Science
25(5):501-512.
|
|
|
2020
|
Zhu Y, Berkowitz O, Selinski J, Hartmann A, Narsai R, Wang Y, Mao P, Whelan J
(2020)
Conserved and Opposite Transcriptome Patterns during Germination in <i>Hordeum vulgare</i> and <i>Arabidopsis thaliana</i>.
International Journal of Molecular Sciences
21(19):.
|
|
|
2020
|
Alves Negrini AC, Evans JR, Kaiser BN, Millar AH, Kariyawasam BC, Atkin OK
(2020)
Effect of N supply on the carbon economy of barley when accounting for plant size.
Functional Plant Biology
47(4):368-381.
|
|
|
2020
|
Cowley JM, Herliana L, Neumann KA, Ciani S, Cerne V, Burton RA
(2020)
A small-scale fractionation pipeline for rapid analysis of seed mucilage characteristics
Plant Methods
16:20.
|
|
|
2020
|
Garcia-Gimenez G, Barakate A, Smith P, Stephens J, Khor SF, Doblin MS, Hao P, Bacic A, Fincher GB, Burton RA, Waugh R, Tucker MR, Houston K
(2020)
Targeted mutation of barley (1,3;1,4)-β-glucan synthases reveals complex relationships between the storage and cell wall polysaccharide content.
The Plant Journal
104(4):1009-1022.
|
|
|
2020
|
Gerke P, Szövényi P, Neubauer A, Lenz H, Gutmann B, Mcdowell R, Small I, Schallenberg-Rüdinger M, Knoop V
(2020)
Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis.
The New phytologist
225(5):1974-1992.
|
|
|
2020
|
Chen C, Meng Y, Shopan J, Whelan J, Hu Z, Yang J, Zhang M
(2020)
Identification and characterization of Arabidopsis thaliana mitochondrial F<sub>1</sub>F<sub>0</sub>-ATPase inhibitor factor 1.
J. Plant Physiol
254:153264.
|
|
|
2020
|
Meng X, Li L, Narsai R, De Clercq I, Whelan J, Berkowitz O
(2020)
Mitochondrial signalling is critical for acclimation and adaptation to flooding in Arabidopsis thaliana.
The Plant Journal
103(1):227-247.
|
|
|
2020
|
Borjigin C, Schilling RK, Bose J, Hrmova M, Qiu J, Wege S, Situmorang A, Byrt C, Brien C, Berger B, Gilliham M, Pearson AS, Roy SJ
(2020)
A single nucleotide substitution in TaHKT1;5-D controls shoot Na<sup>+</sup> accumulation in bread wheat.
Plant, Cell & Environment
43(9):2158-2171.
|
|
|
2020
|
Tivendale ND, Hanson AD, Henry CS, Hegeman AD, Millar AH
(2020)
Enzymes as Parts in Need of Replacement - and How to Extend Their Working Life.
Trends in Plant Science
25(7):661-669.
|
|
|
2020
|
Setter TL, Munns R, Stefanova K, Shabala S
(2020)
What makes a plant science manuscript successful for publication?
Functional Plant Biology
47(12):1138-1146.
|
|
|
2020
|
O'Leary BM
(2020)
The Plant Cell
32(4):805-806.
|
|
|
2020
|
O'Leary BM
(2020)
The Lure of Lignin: Deciphering High-value Lignin Formation in Seed Coats.
The Plant Cell
32(12):3652-3653.
|
|
|
2020
|
Cazzonelli CI, Hou X, Alagoz Y, Rivers J, Dhami N, Lee J, Marri S, Pogson BJ
(2020)
A <i>cis</i>-carotene derived apocarotenoid regulates etioplast and chloroplast development.
eLIFE
9:.
|
|
|
2020
|
O'Leary BM
(2020)
Feasting While Fasting: How Autophagy Helps Maize Survive Carbon Starvation.
The Plant Cell
32(9):2663-2664.
|
|
|
2020
|
Coast O, Harden S, Conaty WC, Brodrick R, Edwards EJ
(2020)
Canopy temperature of high-nitrogen water-stressed cotton.
Crop Science
60(3):1513-1529.
|
|
|
2020
|
Shelden MC, Gilbert SE, Tyerman SD
(2020)
A laser ablation technique maps differences in elemental composition in roots of two barley cultivars subjected to salinity stress.
The Plant Journal
101(6):1462-1473.
|
|
|
2020
|
Small ID, Schallenberg-Rüdinger M, Takenaka M, Mireau H, Ostersetzer-Biran O
(2020)
Plant organellar RNA editing: what 30 years of research has revealed.
The Plant Journal
101(5):1040-1056.
|
|
|
2020
|
O'Leary BM, Oh GGK, Lee CP, Millar AH
(2020)
Metabolite regulatory interactions control plant respiratory metabolism via Target of Rapamycin (TOR) kinase activation.
The Plant Cell
32(3):666-682.
|
|
|
2020
|
Hadjieconomou D, King G, Gaspar P, Mineo A, Blackie L, Ameku T, Studd C, de Mendoza A, Diao F, White BH, Brown AEX, Plaçais PY, Préat T, Miguel-Aliaga I
(2020)
Enteric neurons increase maternal food intake during reproduction.
Nature
587(7834):455-459.
|
|
|
2020
|
Salih KJ, Duncan O, Li L, O'Leary B, Fenske R, Troesch J, Millar AH
(2020)
Impact of oxidative stress on the function, abundance and turnover of the Arabidopsis 80S cytosolic ribosome.
The Plant Journal
103(1):128-139.
|
|
|
2020
|
Tarkowski ŁP, Signorelli S, Höfte M
(2020)
γ-Aminobutyric acid and related amino acids in plant immune responses: emerging mechanisms of action
Plant, Cell & Environment
43(5):1103-1116.
|
|
|
2020
|
Ahrens CW, James EA, Miller AD, Scott F, Aitken NC, Jones AW, Lu-Irving P, Borevitz JO, Cantrill DJ, Rymer PD
(2020)
Spatial, climate and ploidy factors drive genomic diversity and resilience in the widespread grass Themeda triandra.
Molecular ecology
29(20):3872-3888.
|
|
|
2020
|
Eichten SR, Srivastava A, Reddiex AJ, Ganguly DR, Heussler A, Streich JC, Wilson PB, Borevitz JO
(2020)
Extending the Genotype in Brachypodium by Including DNA Methylation Reveals a Joint Contribution with Genetics on Adaptive Traits.
G3
10(5):1629-1637.
|
|
|
2020
|
Liew LC, Narsai R, Wang Y, Berkowitz O, Whelan J, Lewsey MG
(2020)
Temporal tissue-specific regulation of transcriptomes during barley (Hordeum vulgare) seed germination.
The Plant Journal
101(3):700-715.
|
|
|
2020
|
Cognat V, Morelle G, Megel C, Lalande S, Molinier J, Vincent T, Small I, Duchêne AM, Maréchal-Drouard L
(2020)
The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic.
Nucleic Acids Research
48(15):8812-8813.
|
|
|
2020
|
Asao S, Hayes L, Aspinwall MJ, Rymer PD, Blackman C, Bryant CJ, Cullerne D, Egerton JJG, Fan Y, Innes P, Millar AH, Tucker J, Shah S, Wright IJ, Yvon-Durocher G, Tissue D, Atkin OK
(2020)
Leaf trait variation is similar among genotypes of Eucalyptus camaldulensis from differing climates and arises in plastic responses to the seasons rather than water availability.
The New phytologist
227(3):780-793.
|
|
|
2020
|
Ghifari AS, Teixeira PF, Kmiec B, Pružinská A, Glaser E, Murcha MW
(2020)
A mitochondrial prolyl aminopeptidase PAP2 releases N-terminal proline and regulates proline homeostasis during stress response.
The Plant journal: for cell and molecular biology
104(5):1182-1194.
|
|
|
2020
|
Lozano-Claros D, Meng X, Custovic E, Deng G, Berkowitz O, Whelan J, Lewsey MG
(2020)
Developmental normalization of phenomics data generated by high throughput plant phenotyping systems.
Plant Methods
16:111.
|
|
|
2020
|
Petereit J, Duncan O, Murcha MW, Fenske R, Cincu E, Cahn J, Pružinská A, Ivanova A, Kollipara L, Wortelkamp S, Sickmann A, Lee J, Lister R, Millar AH, Huang S
(2020)
Mitochondrial CLPP2 Assists Coordination and Homeostasis of Respiratory Complexes.
Plant Physiology
184(1):148-164.
|
|
|
2020
|
Huang S, Petereit J, Millar AH
(2020)
Loss of conserved mitochondrial CLPP and its functions lead to different phenotypes in plants and other organisms.
Plant Signaling and Behavior
15(12):1831789.
|
|
|
2020
|
Martin S, Poppe D, Olova N, O'Leary C, Ivanova E, Pflueger J, Dechka J, Simmons RK, Cooper HM, Reik W, Lister R, Wolvetang EJ
(2020)
Conserved and divergent features of DNA methylation in embryonic stem cell-derived neurons
bioRxiv
|
|
|
2020
|
Joshi J, Beaudoin GAW, Patterson JA, García-García JD, Belisle CE, Chang LY, Li L, Duncan O, Millar AH, Hanson AD
(2020)
Bioinformatic and experimental evidence for suicidal and catalytic plant THI4s.
Biochemical Journal
477(11):2055-2069.
|
|
|
2020
|
Lim WL, Collins HM, Byrt CS, Lahnstein J, Shirley NJ, Aubert MK, Tucker MR, Peukert M, Matros A, Burton RA
(2020)
Overexpression of HvCslF6 in barley grain alters carbohydrate partitioning plus transfer tissue and endosperm development.
Journal of Experimental Botany
71(1):138-153.
|
|
|
2020
|
Ross SE, Angeloni A, Geng FS, de Mendoza A, Bogdanovic O
(2020)
Developmental remodelling of non-CG methylation at satellite DNA repeats.
Nucleic Acids Research
48(22):12675-12688.
|
|
|
2020
|
Al Mutairi AA, Cavagnaro TR, Khor SF, Neumann K, Burton RA, Watts-Williams SJ
(2020)
The effect of zinc fertilisation and arbuscular mycorrhizal fungi on grain quality and yield of contrasting barley cultivars.
Functional Plant Biology
47(2):122-133.
|
|
|
2020
|
Qiu J, Mcgaughey SA, Groszmann M, Tyerman SD, Byrt CS
(2020)
Phosphorylation influences water and ion channel function of AtPIP2;1.
Plant, Cell & Environment
43(10):2428-2442.
|
|
|
2020
|
Wege S
(2020)
Sweet or Sour? Important Link between Nitrate Signaling and Malate Accumulation Identified in Apple.
Plant Physiology
183(2):439-440.
|
|
|
2020
|
Gutmann B, Royan S, Schallenberg-Rüdinger M, Lenz H, Castleden IR, Mcdowell R, Vacher MA, Tonti-Filippini J, Bond CS, Knoop V, Small ID
(2020)
The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants.
Molecular Plant
13(2):215-230.
|
|
|
2020
|
Hrmova M, Gilliham M, Tyerman SD
(2020)
Plant transporters involved in combating boron toxicity: beyond 3D structures.
Biochemical Society transactions
48(4):1683-1696.
|
|
|
2020
|
Knaupp AS, Mohenska M, Larcombe MR, Ford E, Lim SM, Wong K, Chen J, Firas J, Huang C, Liu X, Nguyen T, Sun YBY, Holmes ML, Tripathi P, Pflueger J, Rossello FJ, Schröder J, Davidson KC, Nefzger CM, Das PP, Haigh JJ, Lister R, Schittenhelm RB, Polo JM
(2020)
TINC- A Method to Dissect Regulatory Complexes at Single-Locus Resolution- Reveals an Extensive Protein Complex at the Nanog Promoter.
Stem cell reports
15(6):1246-1259.
|
|
|
2020
|
Xu B, Hrmova M, Gilliham M
(2020)
Plant Direct
4(10):e00275.
|
|
|
2020
|
Freytag S, Lister R
(2020)
schex avoids overplotting for large single cell RNA-sequencing datasets.
Bioinformatics
36(7):2291-2292.
|
|
|
2020
|
Hooper CM, Castleden IR, Aryamanesh N, Black K, Grasso SV, Millar AH
(2020)
CropPAL for discovering divergence in protein subcellular location in crops to support strategies for molecular crop breeding.
The Plant Journal
104(3):812-827.
|
|
|
2020
|
Kamran M, Ramesh SA, Gilliham M, Tyerman SD, Bose J
(2020)
Role of TaALMT1 malate-GABA transporter in alkaline pH tolerance of wheat.
Plant, Cell & Environment
43(10):2443-2459.
|
|
|
2020
|
Denisenko E, Guo BB, Jones M, Hou R, de Kock L, Lassmann T, Poppe D, Clément O, Simmons RK, Lister R, Forrest ARR
(2020)
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.
Genome Biology
21(1):130.
|
|
|
2020
|
Rashid FAA, Crisp PA, Zhang Y, Berkowitz O, Pogson BJ, Day DA, Masle J, Dewar RC, Whelan J, Atkin OK, Scafaro AP
(2020)
Molecular and physiological responses during thermal acclimation of leaf photosynthesis and respiration in rice.
Plant, cell & environment
43(3):594-610.
|
|
|
2020
|
Wu Y, Henderson SW, Wege S, Zheng F, Walker AR, Walker RR, Gilliham M
(2020)
The grapevine NaE sodium exclusion locus encodes sodium transporters with diverse transport properties and localisation
J. Plant Physiol
246–247.
|
|
|
2020
|
Nevill PG, Zhong X, Tonti-Filippini J, Byrne M, Hislop M, Thiele K, Van Leeuwen S, Boykin LM, Small I
(2020)
Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics.
Plant Methods
16:1.
|
|
|
2020
|
Tran STH, Imran S, Horie T, Qiu J, McGaughey S, Byrt CS, Tyerman SD, Katsuhara M
(2020)
International Journal of Molecular Sciences
21(19):undefined.
|
|
|
2020
|
Liu X, Ouyang JF, Rossello FJ, Tan JP, Davidson KC, Valdes DS, Schröder J, Sun YBY, Chen J, Knaupp AS, Sun G, Chy HS, Huang Z, Pflueger J, Firas J, Tano V, Buckberry S, Paynter JM, Larcombe MR, Poppe D, Choo XY, O'Brien CM, Pastor WA, Chen D, Leichter AL, Naeem H, Tripathi P, Das PP, Grubman A, Powell DR, Laslett AL, David L, Nilsson SK, Clark AT, Lister R, Nefzger CM, Martelotto LG, Rackham OJL, Polo JM
(2020)
Reprogramming roadmap reveals route to human induced trophoblast stem cells.
Nature
586(7827):101-107.
|
|
|
2020
|
Carbonnel S, Torabi S, Griesmann M, Bleek E, Tang Y, Buchka S, Basso V, Shindo M, Boyer FD, Wang TL, Udvardi M, Waters MT, Gutjahr C
(2020)
Lotus japonicus karrikin receptors display divergent ligand-binding specificities and organ-dependent redundancy.
PLOS Genetics
16(12):e1009249.
|
|
|
2020
|
Behsaz B, Mohimani H, Gurevich A, Prjibelski A, Fisher M, Vargas F, Smarr L, Dorrestein PC, Mylne JS, Pevzner PA
(2020)
De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments.
Cell systems
10(1):99-108.e5.
|
|
|
2020
|
de Mendoza A, Lister R, Bogdanovic O
(2020)
Evolution of DNA Methylome Diversity in Eukaryotes.
Journal of Molecular Biology
432(6):1687-1705.
|
|
|
2020
|
Che-Othman MH, Jacoby RP, Millar AH, Taylor NL
(2020)
Wheat mitochondrial respiration shifts from the tricarboxylic acid cycle to the GABA shunt under salt stress.
The New phytologist
225(3):1166-1180.
|
|
|
2020
|
Phan JL, Cowley JM, Neumann KA, Herliana L, O'Donovan LA, Burton RA
(2020)
The novel features of Plantago ovata seed mucilage accumulation, storage and release.
Scientific Reports
10(1):11766.
|
|
|
2020
|
O'Leary BM, Scafaro AP, Fenske R, Duncan O, Ströher E, Petereit J, Millar AH
(2020)
Rubisco lysine acetylation occurs at very low stoichiometry in mature Arabidopsis leaves: implications for regulation of enzyme function.
Biochemical Journal
477(19):3885-3896.
|
|
|
2020
|
Liew LC, Wang Y, Peirats-Llobet M, Berkowitz O, Whelan J, Lewsey MG
(2020)
Laser-Capture Microdissection RNA-Sequencing for Spatial and Temporal Tissue-Specific Gene Expression Analysis in Plants.
Journal of Visualized Experiments
(162):.
|
|
|
2020
|
O'Leary BM
(2020)
Another Brick in the Plant Cell Wall: Characterization of Arabidopsis CSLD3 Function in Cell Wall Synthesis.
The Plant Cell
32(5):1359-1360.
|
|
|
2020
|
Salih KJ, Duncan O, Li L, Trösch J, Millar AH
(2020)
The composition and turnover of the Arabidopsis thaliana 80S cytosolic ribosome.
Biochemical Journal
477(16):3019-3032.
|
|
|
2020
|
Wang H, Atkin OK, Keenan TF, Smith NG, Wright IJ, Bloomfield KJ, Kattge J, Reich PB, Prentice IC
(2020)
Acclimation of leaf respiration consistent with optimal photosynthetic capacity.
Global change biology
26(4):2573-2583.
|
|
|
2020
|
Wege S
(2020)
Plants Increase Photosynthesis Efficiency by Lowering the Proton Gradient across the Thylakoid Membrane.
Plant Physiology
182(4):1812-1813.
|
|
|
2020
|
Betts NS, Dockter C, Berkowitz O, Collins HM, Hooi M, Lu Q, Burton RA, Bulone V, Skadhauge B, Whelan J, Fincher GB
(2020)
Transcriptional and biochemical analyses of gibberellin expression and content in germinated barley grain.
Journal of Experimental Botany
71(6):1870-1884.
|
|
|
2020
|
Long Y, Tyerman SD, Gilliham M
(2020)
Cytosolic GABA inhibits anion transport by wheat ALMT1.
The New phytologist
225(2):671-678.
|
|
|
2020
|
Hoai PTT, Tyerman SD, Schnell N, Tucker M, McGaughey SA, Qiu J, Groszmann M, Byrt CS
(2020)
Deciphering aquaporin regulation and roles in seed biology
Journal of Experimental Botany
71(6):1763-1773.
|
|
|
2020
|
Geng FS, De La Calle-Mustienes E, Gómez-Skarmeta JL, Lister R, Bogdanovic O
(2020)
Depletion of Foxk transcription factors causes genome-wide transcriptional misregulation and developmental arrest in zebrafish embryos.
microPublication biology
2020():.
|
|
|
2020
|
Wang S, Li L, Ying Y, Wang J, Shao JF, Yamaji N, Whelan J, Ma JF, Shou H
(2020)
A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localising IRO2 to the nucleus in rice.
The New phytologist
225(3):1247-1260.
|
|
|
2020
|
Walkowiak S, Gao L, Monat C, Haberer G, Kassa MT, Brinton J, Ramirez-Gonzalez RH, Kolodziej MC, Delorean E, Thambugala D, Klymiuk V, Byrns B, Gundlach H, Bandi V, Siri JN, Nilsen K, Aquino C, Himmelbach A, Copetti D, Ban T, Venturini L, Bevan M, Clavijo B, Koo DH, Ens J, Wiebe K, N'Diaye A, Fritz AK, Gutwin C, Fiebig A, Fosker C, Fu BX, Accinelli GG, Gardner KA, Fradgley N, Gutierrez-Gonzalez J, Halstead-Nussloch G, Hatakeyama M, Koh CS, Deek J, Costamagna AC, Fobert P, Heavens D, Kanamori H, Kawaura K, Kobayashi F, Krasileva K, Kuo T, Mckenzie N, Murata K, Nabeka Y, Paape T, Padmarasu S, Percival-Alwyn L, Kagale S, Scholz U, Sese J, Juliana P, Singh R, Shimizu-Inatsugi R, Swarbreck D, Cockram J, Budak H, Tameshige T, Tanaka T, Tsuji H, Wright J, Wu J, Steuernagel B, Small I, Cloutier S, Keeble-Gagnère G, Muehlbauer G, Tibbets J, Nasuda S, Melonek J, Hucl PJ, Sharpe AG, Clark M, Legg E, Bharti A, Langridge P, Hall A, Uauy C, Mascher M, Krattinger SG, Handa H, Shimizu KK, Distelfeld A, Chalmers K, Keller B, Mayer KFX, Poland J, Stein N, Mccartney CA, Spannagl M, Wicker T, Pozniak CJ
(2020)
Multiple wheat genomes reveal global variation in modern breeding.
Nature
588(7837):277-283.
|
|
|
2020
|
Huang S, Li L, Petereit J, Millar AH
(2020)
Protein turnover rates in plant mitochondria.
Mitochondrion
53():57-65.
|
|
|
2020
|
Almudi I, Vizueta J, Wyatt CDR, de Mendoza A, Marlétaz F, Firbas PN, Feuda R, Masiero G, Medina P, Alcaina-Caro A, Cruz F, Gómez-Garrido J, Gut M, Alioto TS, Vargas-Chavez C, Davie K, Misof B, González J, Aerts S, Lister R, Paps J, Rozas J, Sánchez-Gracia A, Irimia M, Maeso I, Casares F
(2020)
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings.
Nature Communications
11(1):2631.
|
|
|
2020
|
Dayer S, Scharwies JD, Ramesh SA, Sullivan W, Doerflinger FC, Pagay V, Tyerman SD
(2020)
Comparing Hydraulics Between Two Grapevine Cultivars Reveals Differences in Stomatal Regulation Under Water Stress and Exogenous ABA Applications.
Frontiers in Plant Science
11():705.
|
|
|
2020
|
Rashid FAA, Scafaro AP, Asao S, Fenske R, Dewar RC, Masle J, Taylor NL, Atkin OK
(2020)
Diel- and temperature-driven variation of leaf dark respiration rates and metabolite levels in rice.
The New phytologist
228(1):56-69.
|
|
|
2020
|
Fisher MF, Payne CD, Chetty T, Crayn D, Berkowitz O, Whelan J, Rosengren KJ, Mylne JS
(2020)
The genetic origin of evolidine, the first cyclopeptide discovered in plants, and related orbitides.
The Journal of Biological Chemistry
295(42):14510-14521.
|
|
|
2020
|
Zhou J, Cavagnaro TR, De Bei R, Nelson TM, Stephen JR, Metcalfe A, Gilliham M, Breen J, Collins C, López CMR
(2020)
Wine Terroir and the Soil Bacteria: An Amplicon Sequencing-Based Assessment of the Barossa Valley and Its Sub-Regions.
Frontiers in microbiology
11():597944.
|
|
|
2020
|
Kenny NJ, Francis WR, Rivera-Vicéns RE, Juravel K, de Mendoza A, Díez-Vives C, Lister R, Bezares-Calderón LA, Grombacher L, Roller M, Barlow LD, Camilli S, Ryan JF, Wörheide G, Hill AL, Riesgo A, Leys SP
(2020)
Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri.
Nature Communications
11(1):3676.
|
|
|
2020
|
Sun S, Yi C, Ma J, Wang S, Peirats-Llobet M, Lewsey MG, Whelan J, Shou H
(2020)
Analysis of Spatio-Temporal Transcriptome Profiles of Soybean (<i>Glycine max</i>) Tissues during Early Seed Development.
International Journal of Molecular Sciences
21(20):.
|
|
|
2020
|
Coast O, Šebela D, Quiñones C, Jagadish SK
(2020)
Systematic determination of the reproductive growth stage most sensitive to high night temperature stress in rice (Oryza sativa)
Crop Science
60(1):391-403.
|
|
|
2020
|
Houston K, Qiu J, Wege S, Hrmova M, Oakey H, Qu Y, Smith P, Situmorang A, Macaulay M, Flis P, Bayer M, Roy S, Halpin C, Russell J, Schreiber M, Byrt C, Gilliham M, Salt DE, Waugh R
(2020)
Barley sodium content is regulated by natural variants of the Na<sup>+</sup> transporter HvHKT1;5.
Communications Biology
3(1):258.
|
|
|
2020
|
Munns R, Day DA, Fricke W, Watt M, Arsova B, Barkla BJ, Bose J, Byrt CS, Chen ZH, Foster KJ, Gilliham M, Henderson SW, Jenkins CLD, Kronzucker HJ, Miklavcic SJ, Plett D, Roy SJ, Shabala S, Shelden MC, Soole KL, Taylor NL, Tester M, Wege S, Wegner LH, Tyerman SD
(2020)
Energy costs of salt tolerance in crop plants.
The New phytologist
225(3):1072-1090.
|
|
|
2019
|
Harris KD, Lloyd JPB, Domb K, Zilberman D, Zemach A
(2019)
DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
Epigenetics and Chromatin
12(1):62.
|
|
|
2019
|
Flores-Moreno H, Fazayeli F, Banerjee A, Datta A, Kattge J, Butler E, Atkin OK, Wythers K, Chen, M, Anand M, Bahn M, Burrascano S, Byun C, Cornelissen J, Craine J, Gonzalez-Melo A, Hattingh, W, Jansen S, Kraft N, Kramer K, Laughlin D, Minden V, Niinemets Ü, Onipchenko V, Peñuelas J, Soudzilovskaia N, Reich P
(2019)
Robustness of trait connections between multiple plant organs across environmental gradients and growth forms.
Global Ecology and Biogeography
28: 1806-1826.
|
|
|
2019
|
de Mendoza A, Hatleberg WL, Pang K, Leininger S, Bogdanovic O, Pflueger J, Buckberry S, Technau U, Hejnol A, Adamska M, Degnan BM, Degnan SM, Lister R
(2019)
Convergent evolution of a vertebrate-like methylome in a marine sponge.
Nature ecology & evolution
3(10):1464-1473.
|
|
|
2019
|
van der Hulst L, Munguia P, Culbert JA, Ford CM, Burton RA, Wilkinson KL
(2019)
Accumulation of volatile phenol glycoconjugates in grapes following grapevine exposure to smoke and potential mitigation of smoke taint by foliar application of kaolin.
Planta
249(3):941-952.
|
|
|
2019
|
Signorelli S, Shaw J, Hermawaty D, Wang Z, Verboven P, Considine JA, Considine MJ
(2019)
The initiation of bud burst in grapevine features dynamic regulation of the apoplastic pore size
Journal of Experimental Botany
71(2):719-729.
|
|
|
2019
|
Ward B, Brien C, Oakey H, Pearson A, Negrão S, Schilling RK, Taylor J, Jarvis D, Timmins A, Roy SJ, Tester M, Berger B, van den Hengel A
(2019)
High-throughput 3D modelling to dissect the genetic control of leaf elongation in barley (Hordeum vulgare).
The Plant Journal
98(3):555-570.
|
|
|
2019
|
Guo Q, Ng PQ, Shi S, Fan D, Li J, Zhao J, Wang H, David R, Mittal P, Do T, Bock R, Zhao M, Zhou W, Searle I
(2019)
Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth.
PLoS ONE
14(11):e0225064.
|
|
|
2019
|
Wang S, Yokosho K, Guo R, Whelan J, Ruan YL, Ma JF, Shou H
(2019)
The Soybean Sugar Transporter GmSWEET15 Mediates Sucrose Export from Endosperm to Early Embryo.
Plant Physiology
180(4):2133-2141.
|
|
|
2019
|
Lambers CGPPEHOSOLKWPLCOKAH
(2019)
Trait convergence in photosynthetic nutrient‐use efficiency along a 2‐million year dune chronosequence in a global biodiversity hotspot
Journal of Ecology
107(4): 2006-2023.
|
|
|
2019
|
Tabares-da Rosa S, Signorelli S, Del Papa M, Sabatini O, Reyno R, Lattanzi F, Rebuffo M, Sanjuán J, Monza J
(2019)
Rhizobia Inoculants for Alfalfa in Acid Soils: a Proposal for Uruguay
Agrociencia
|
|
|
2019
|
Garcia-Gimenez G, Russell J, Aubert MK, Fincher GB, Burton RA, Waugh R, Tucker MR, Houston K
(2019)
Barley grain (1,3;1,4)-β-glucan content: effects of transcript and sequence variation in genes encoding the corresponding synthase and endohydrolase enzymes.
Scientific Reports
9(1):17250.
|
|
|
2019
|
Fisher MF, Mylne JS
(2019)
Sequencing Orbitides by Acid-Mediated Ring Cleavage Followed by Tandem Mass Spectrometry.
J. Proteome Research
18(11):4065-4071.
|
|
|
2019
|
Matros A, Peukert M, Lahnstein J, Burton USAR
(2019)
Determination of Fructans in Plants: Current Analytical Means for Extraction, Detection, and Quantification
Annual Plant Reviews
2(1).
|
|
|
2019
|
Grubman A, Chew G, Ouyang JF, Sun G, Choo XY, McLean C, Simmons RK, Buckberry S, Vargas-Landin DB, Poppe D, Pflueger J, Lister R, Rackham OJL, Petretto E, Polo JM
(2019)
A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation.
Nature neuroscience
22(12):2087-2097.
|
|
|
2019
|
Van Moerkercke A, Duncan O, Zander M, Šimura J, Broda M, Vanden Bossche R, Lewsey MG, Lama S, Singh KB, Ljung K, Ecker JR, Goossens A, Millar AH, Van Aken O
(2019)
A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels.
Proceedings of the National Academy of Sciences of the United States of America
116(46):23345-23356.
|
|
|
2019
|
Lee K, Park SJ, Colas des Francs-Small C, Whitby M, Small I, Kang H
(2019)
The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts.
The Plant Journal
100(6):1193-1207.
|
|
|
2019
|
Signorelli S, Masclaux-Daubresse C, Moriyasu Y, Van den Ende W, Bassham DC
(2019)
Editorial: Sugars and Autophagy in Plants
Frontiers in Plant Science
10:1190.
|
|
|
2019
|
Murray KD, Janes JK, Jones A, Bothwell HM, Andrew RL, Borevitz JO
(2019)
Landscape drivers of genomic diversity and divergence in woodland Eucalyptus.
Molecular Ecology
28(24):5232-5247.
|
|
|
2019
|
Vacher M, Small I
(2019)
Simulation of heterosis in a genome-scale metabolic network provides mechanistic explanations for increased biomass production rates in hybrid plants.
npj Systems Biology and Applications
5():24.
|
|
|
2019
|
Marzec M, Brewer P
(2019)
Binding or Hydrolysis? How Does the Strigolactone Receptor Work?
Trends in Plant Science
24(7):571-574.
|
|
|
2019
|
Eichten S, Srivastava A, Reddiex A, Ganguly D, Heussler A, Streich J, Wilson P, Borevitz J
(2019)
Extending the genotype in Brachypodium by including DNA methylation reveals a joint contribution with genetics on adaptive traits
bioRxiv
|
|
|
2019
|
Hammer, T. A, Zhong, X., Colas des Francs-Small C., Nevill, P. G., Small, I. D., Thiele, K. R.
(2019)
Resolving intergeneric relationships in the aervoid clade and the backbone of Ptilotus (Amaranthaceae): Evidence from whole plastid genomes and morphology
Taxon
68(2): 297-314.
|
|
|
2019
|
Little A, Lahnstein J, Jeffery DW, Khor SF, Schwerdt JG, Shirley NJ, Hooi M, Xing X, Burton RA, Bulone V
(2019)
Natural Variation in Ovule Morphology Is Influenced by Multiple Tissues and Impacts Downstream Grain Development in Barley ( <i>Hordeum vulgare</i> L.)
ACS central science
5(1):73-84.
|
|
|
2019
|
Denisenko E, Guo BB, Jones M, Hou R, Kock LD, Lassmann T, Poppe D, Clement O, Simmons RK, Lister R, Forrest AR
(2019)
Systematic bias assessment in solid tissue 10x scRNA-seq workflows
bioRxiv
|
|
|
2019
|
Watkins JL, Li M, McQuinn RP, Chan KX, McFarlane HE, Ermakova M, Furbank RT, Mares DJ, Dong C, Chalmers KJ, Sharp P, Mather D, Pogson BJ
(2019)
A GDSL Esterase/Lipase Catalyzes the Esterification of Lutein in Bread Wheat.
The Plant Cell
31(12):3092-3112.
|
|
|
2019
|
Diefenbach RJ, Lee JH, Chandler D, Wang Y, Pflueger C, Long GV, Scolyer RA, Carlino MS, Menzies AM, Kefford RF, Rizos H
(2019)
Hypermethylation of Circulating Free DNA in Cutaneous Melanoma
Applied Sciences (MDPI)
9(23):5074.
|
|
|
2019
|
Hammer TA, Zhong X, Francs-Small CCD, Nevill PG, Small ID, Thiele KR
(2019)
Resolving intergeneric relationships in the aervoid clade and the backbone of Ptilotus (Amaranthaceae): evidence from whole plastid genomes and morphology
Taxon
68(2): 297-314.
|
|
|
2019
|
Selinski J, Scheibe R
(2019)
Malate valves: old shuttles with new perspectives
Plant Biology
21: 21-30.
|
|
|
2019
|
Fisher MF, Payne CD, Rosengren KJ, Mylne JS
(2019)
An Orbitide from <i>Ratibida columnifera</i> Seed Containing 16 Amino Acid Residues.
Journal of Natural Products
82(8):2152-2158.
|
|
|
2019
|
Asif MA, Pearson AS, Schilling RK, Roy SJ
(2019)
Opportunities for Developing Salt-tolerant Wheat and Barley Varieties
Annual Plant Reviews
2(1).
|
|
|
2019
|
David R, Kortschak R, Searle I
(2019)
The root hair defective phenotype of Arabidopsis thaliana Pol IV subunit mutant nrpd1a-3 is associated with a deletion in RHD6
microPublication biology
|
|
|
2019
|
Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Çebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Stilio VSD, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, García N, Gâteblé G, Godden GT, Goh FQY, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Konrat MV, Könyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li F, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng Y, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlösser E, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN, Stinchcombe JR, Szövényi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang C, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu S, Wulff AS, Yang Y, Zhu D, Zhuang C, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng S, Li J, Li R, Li X, Lu H, Ou Y, Sun X, Tan X, Tang J, Tian Z, Wang F, Wang J, Wei X, Xu X, Yan Z, Yang F, Zhong X, Zhou F, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen N, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong H, Lu-Irving P, Marx HE, Qi X, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu R, Zhan S, Gramzow L, Theißen G, Wong GK
(2019)
One thousand plant transcriptomes and the phylogenomics of green plants
Nature
574(7780):679-685.
|
|
|
2019
|
Lama S, Broda M, Abbas Z, Vaneechoutte D, Belt K, Säll T, Vandepoele K, Van Aken O
(2019)
Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants.
Molecular Biology and Evolution
36(5):974-989.
|
|
|
2019
|
Ghifari AS, Huang S, Murcha MW
(2019)
The peptidases involved in plant mitochondrial protein import.
Journal of Experimental Botany
70(21):6005-6018.
|
|
|
2019
|
Zia SF, Berkowitz O, Bedon F, Whelan J, Franks AE, Plummer KM
(2019)
Direct comparison of Arabidopsis gene expression reveals different responses to melatonin versus auxin.
BMC Plant Biology
19(1):567.
|
|
|
2019
|
Amarasinghe SL, Watson-Haigh NS, Byrt C, James R, Qiu J, Berkowitz O, Whelan J, Roy SJ, Gilliham M, Baumann U
(2019)
Transcriptional variation is associated with differences in shoot sodium accumulation in distinct barley varieties
Environmental and Experimental Botany
166.
|
|
|
2019
|
Wilkinson LG, Yang X, Burton RA, Würschum T, Tucker MR
(2019)
Natural Variation in Ovule Morphology Is Influenced by Multiple Tissues and Impacts Downstream Grain Development in Barley ( <i>Hordeum vulgare</i> L.)
Frontiers in Plant Science
10:1374.
|
|
|
2019
|
Thomas HJD, Myers-Smith IH, Bjorkman AD, Elmendorf SC, Blok D, Cornelissen JHC, Forbes BC, Hollister RD, Normand S, Prevéy JS, Rixen C, Schaepman-Strub G, Wilmking M, Wipf S, Cornwell WK, Kattge J, Goetz SJ, Guay KC, Alatalo JM, Anadon-Rosell A, Angers-Blondin S, Berner LT, Björk RG, Buchwal A, Buras A, Carbognani M, Christie K, Siegwart Collier L, Cooper EJ, Eskelinen A, Frei ER, Grau O, Grogan P, Hallinger M, Heijmans MMPD, Hermanutz L, Hudson JMG, Hülber K, Iturrate-Garcia M, Iversen CM, Jaroszynska F, Johnstone JF, Kaarlejärvi E, Kulonen A, Lamarque LJ, Lévesque E, Little CJ, Michelsen A, Milbau A, Nabe-Nielsen J, Nielsen SS, Ninot JM, Oberbauer SF, Olofsson J, Onipchenko VG, Petraglia A, Rumpf SB, Semenchuk PR, Soudzilovskaia NA, Spasojevic MJ, Speed JDM, Tape KD, Te Beest M, Tomaselli M, Trant A, Treier UA, Venn S, Vowles T, Weijers S, Zamin T, Atkin OK, Bahn M, Blonder B, Campetella G, Cerabolini BEL, Chapin Iii FS, Dainese M, de Vries FT, Díaz S, Green W, Jackson RB, Manning P, Niinemets Ü, Ozinga WA, Peñuelas J, Reich PB, Schamp B, Sheremetev S, van Bodegom PM
(2019)
Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome.
Global ecology and biogeography : a journal of macroecology
28(2):78-95.
|
|
|
2019
|
Ganguly DR, Stone BAB, Bowerman AF, Eichten SR, Pogson BJ
(2019)
Excess Light Priming in Arabidopsis thaliana Genotypes with Altered DNA Methylomes
G3
9(11):3611-3621.
|
|
|
2019
|
Ivanova A, Gill-Hille M, Huang S, Branca RM, Kmiec B, Teixeira PF, Lehtiö J, Whelan J, Murcha MW
(2019)
A Mitochondrial LYR Protein Is Required for Complex I Assembly.
Plant Physiology
181(4):1632-1650.
|
|
|
2019
|
Pflueger C, Swain T, Lister R
(2019)
Harnessing targeted DNA methylation and demethylation using dCas9.
Essays in biochemistry
63(6):813-825.
|
|
|
2019
|
Fuentes S, Tongson EJ, De Bei R, Gonzalez Viejo C, Ristic R, Tyerman S, Wilkinson K
(2019)
Non-Invasive Tools to Detect Smoke Contamination in Grapevine Canopies, Berries and Wine: A Remote Sensing and Machine Learning Modeling Approach.
Sensors
19(15):3335.
|
|
|
2019
|
Wurtzel ET, Vickers CE, Hanson AD, Millar AH, Cooper M, Voss-Fels KP, Nikel PI, Erb TJ
(2019)
Revolutionizing agriculture with synthetic biology.
Nature Plants
5(12):1207-1210.
|
|
|
2019
|
Amthor JS, Bar-Even A, Hanson AD, Millar AH, Stitt M, Sweetlove LJ, Tyerman SD
(2019)
Engineering Strategies to Boost Crop Productivity by Cutting Respiratory Carbon Loss.
The Plant Cell
31(2):297-314.
|
|
|
2019
|
Huang S, Braun HP, Gawryluk RMR, Millar AH
(2019)
Mitochondrial complex II of plants: subunit composition, assembly and function in respiration and signaling.
The Plant Journal
98(3):405-417.
|
|
|
2019
|
Tyerman SD, Munns R, Fricke W, Arsova B, Barkla BJ, Bose J, Bramley H, Byrt C, Chen Z, Colmer TD, Cuin T, Day DA, Foster KJ, Gilliham M, Henderson SW, Horie T, Jenkins CLD, Kaiser BN, Katsuhara M, Plett D, Miklavcic SJ, Roy SJ, Rubio F, Shabala S, Shelden M, Soole K, Taylor NL, Tester M, Watt M, Wege S, Wegner LH, Wen Z
(2019)
Energy costs of salinity tolerance in crop plants.
The New phytologist
221(1):25-29.
|
|
|
2019
|
Nevill PG, Howell KA, Cross AT, Williams AV, Zhong X, Tonti-Filippini J, Boykin LM, Dixon KW, Small I
(2019)
Plastome-Wide Rearrangements and Gene Losses in Carnivorous Droseraceae.
Genome Biology and Evolution
11(2):472-485.
|
|
|
2019
|
Furci L, Jain R, Stassen J, Berkowitz O, Whelan J, Roquis D, Baillet V, Colot V, Johannes F, Ton J
(2019)
Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in <i>Arabidopsis</i>.
eLIFE
8:.
|
|
|
2019
|
Millar AH, Heazlewood JL, Giglione C, Holdsworth MJ, Bachmair A, Schulze WX
(2019)
The Scope, Functions, and Dynamics of Posttranslational Protein Modifications.
Annual Review of Plant Biology
70:119-151.
|
|
|
2019
|
Ryan MH, Kaur P, Nazeri NK, Clode PL, Keeble-Gagnère G, Doolette AL, Smernik RJ, Van Aken O, Nicol D, Maruyama H, Ezawa T, Lambers H, Millar AH, Appels R
(2019)
Globular structures in roots accumulate phosphorus to extremely high concentrations following phosphorus addition.
Plant, Cell & Environment
42(6):1987-2002.
|
|
|
2019
|
Yadav AK, Carroll AJ, Estavillo GM, Rebetzke GJ, Pogson BJ
(2019)
Wheat drought tolerance in the field is predicted by amino acid responses to glasshouse-imposed drought.
Journal of Experimental Botany
70(18):4931-4948.
|
|
|
2019
|
Coast O, Shah S, Ivakov A, Gaju O, Wilson PB, Posch BC, Bryant CJ, Negrini ACA, Evans JR, Condon AG, Silva-Pérez V, Reynolds MP, Pogson BJ, Millar AH, Furbank RT, Atkin OK
(2019)
Predicting dark respiration rates of wheat leaves from hyperspectral reflectance.
Plant, Cell & Environment
42(7):2133-2150.
|
|
|
2019
|
Zhao C, Wang Y, Chan KX, Marchant DB, Franks PJ, Randall D, Tee EE, Chen G, Ramesh S, Phua SY, Zhang B, Hills A, Dai F, Xue D, Gilliham M, Tyerman S, Nevo E, Wu F, Zhang G, Wong GK, Leebens-Mack JH, Melkonian M, Blatt MR, Soltis PS, Soltis DE, Pogson BJ, Chen ZH
(2019)
Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land.
Proceedings of the National Academy of Sciences of the United States of America
116(11):5015-5020.
|
|
|
2019
|
David R, Byrt CS, Tyerman SD, Gilliham M, Wege S
(2019)
Roles of membrane transporters: connecting the dots from sequence to phenotype.
Annals of Botany
24(16):1517-21.
|
|
|
2019
|
Domingos P, Dias PN, Tavares B, Portes MT, Wudick MM, Konrad KR, Gilliham M, Bicho A, Feijó JA
(2019)
Molecular and electrophysiological characterization of anion transport in Arabidopsis thaliana pollen reveals regulatory roles for pH, Ca2+ and GABA
The New phytologist
24(16):1469-74.
|
|
|
2019
|
Richards SM, Hovhannisyan N, Gilliham M, Ingram J, Skadhauge B, Heiniger H, Llamas B, Mitchell KJ, Meachen J, Fincher GB, Austin JJ, Cooper A
(2019)
Low-cost cross-taxon enrichment of mitochondrial DNA using in-house synthesised RNA probes.
PLoS ONE
14(2):e0209499.
|
|
|
2019
|
Ohbayashi I, Huang S, Fukaki H, Song X, Sun S, Morita MT, Tasaka M, Millar AH, Furutani M
(2019)
Mitochondrial Pyruvate Dehydrogenase Contributes to Auxin-Regulated Organ Development.
Plant Physiology
180(2):896-909.
|
|
|
2019
|
Watts-Williams SJ, Cavagnaro TR, Tyerman SD
(2019)
Variable effects of arbuscular mycorrhizal fungal inoculation on physiological and molecular measures of root and stomatal conductance of diverse Medicago truncatula accessions.
Plant, Cell & Environment
42(1):285-294.
|
|
|
2019
|
Srivastava A, Karpievitch YV, Eichten SR, Borevitz JO, Lister R
(2019)
HOME: a histogram based machine learning approach for effective identification of differentially methylated regions.
BMC Bioinformatics
20(1):253.
|
|
|
2019
|
Posch BC, Kariyawasam BC, Bramley H, Coast O, Richards RA, Reynolds MP, Trethowan R, Atkin OK
(2019)
Exploring high temperature responses of photosynthesis and respiration to improve heat tolerance in wheat.
Journal of Experimental Botany
70(19):5051-5069.
|
|
|
2019
|
Aspinwall MJ, Pfautsch S, Tjoelker MG, Vårhammar A, Possell M, Drake JE, Reich PB, Tissue DT, Atkin OK, Rymer PD, Dennison S, Van Sluyter SC
(2019)
Range size and growth temperature influence Eucalyptus species responses to an experimental heatwave.
Global change biology
25(5):1665-1684.
|
|
|
2019
|
Ishibashi K, Small I, Shikanai T
(2019)
Evolutionary model of plastidial RNA editing in angiosperms presumed from genome-wide analysis of Amborella trichopoda.
Plant and Cell Physiology
24(17):1569-72.
|
|
|
2019
|
Small I
(2019)
Transplastomic Arabidopsis plants at last.
Nature Plants
5(3):249-250.
|
|
|
2019
|
Munns R, Passioura JB, Colmer TD, Byrt CS
(2019)
Osmotic adjustment and energy limitations to plant growth in saline soil.
The New phytologist
24(16):1469-74.
|
|
|
2019
|
Li L, Lavell A, Meng X, Berkowitz O, Selinski J, Van De Meene A, Carrie C, Benning C, Whelan J, De Clercq I, Wang Y
(2019)
Arabidopsis DGD1 SUPPRESSOR1 Is a Subunit of the Mitochondrial Contact Site and Cristae Organizing System and Affects Mitochondrial Biogenesis.
The Plant Cell
31(8):1856-1878.
|
|
|
2019
|
Meng X, Li L, De Clercq I, Narsai R, Xu Y, Hartmann A, Claros DL, Custovic E, Lewsey MG, Whelan J, Berkowitz O
(2019)
ANAC017 Coordinates Organellar Functions and Stress Responses by Reprogramming Retrograde Signaling.
Plant Physiology
180(1):634-653.
|
|
|
2019
|
Chen B, Yin G, Whelan J, Zhang Z, Xin X, He J, Chen X, Zhang J, Zhou Y, Lu X
(2019)
Composition of Mitochondrial Complex I during the Critical Node of Seed Aging in Oryza sativa.
J. Plant Physiol
236:7-14.
|
|
|
2019
|
Blanco NE, Liebsch D, Guinea Díaz M, Strand Å, Whelan J
(2019)
Dual and dynamic intracellular localization of Arabidopsis thaliana SnRK1.1.
Journal of Experimental Botany
70(8):2325-2338.
|
|
|
2019
|
Chevalier F, Cuyas L, Jouhet J, Gros VR, Chiarenza S, Secco D, Whelan J, Seddiki K, Block MA, Nussaume L, Marechal E
(2019)
Interplay between Jasmonic Acid, Phosphate Signaling and the Regulation of Glycerolipid Homeostasis in Arabidopsis.
Plant and Cell Physiology
60(6):1260-1273.
|
|
|
2019
|
Rivers JY, Truong TT, Pogson BJ, McQuinn RP
(2019)
Volatile apocarotenoid discovery and quantification in Arabidopsis thaliana: optimized sensitive analysis via HS-SPME-GC/MS.
Metabolomics
15(5):79.
|
|
|
2019
|
Anderson BM, Thiele KR, Grierson PF, Krauss SL, Nevill PG, Small ID, Zhong X, Barrett MD
(2019)
Recent range expansion in Australian hummock grasses (Triodia) inferred using genotyping-by-sequencing
AoB PLANTS
11(2):plz017.
|
|
|
2019
|
Zhang J, Payne CD, Pouvreau B, Schaefer H, Fisher MF, Taylor NL, Berkowitz O, Whelan J, Rosengren KJ, Mylne JS
(2019)
An Ancient Peptide Family Buried within Vicilin Precursors.
ACS chemical biology
14(5):979-993.
|
|
|
2019
|
Chiconato DA, da Silveira Sousa Junior G, dos Santos DMM, Munns R
(2019)
Adaptation of sugarcane plants to saline soil.
Environmental and Experimental Botany
162:201-211.
|
|
|
2019
|
Mujeeb-Kazi A, Munns R, Rasheed A, Ogbonnaya FC, Ali N, Hollington P, Dundas I, Saeed N, Wang R, Rengasamy P, Saddiq MS, de Leon JLD, Ashraf M, Rajaram S
(2019)
Breeding strategies for structuring salinity tolerance in wheat.
Advances in Agronomy
155: 121-187.
|
|
|
2019
|
Skvortsova K, Tarbashevich K, Stehling M, Lister R, Irimia M, Raz E, Bogdanovic O
(2019)
Retention of paternal DNA methylome in the developing zebrafish germline.
Nature Communications
10(1):3054.
|
|
|
2019
|
de Mendoza A, Pflueger J, Lister R
(2019)
Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family.
Genome Research
29(8):1277-1286.
|
|
|
2019
|
Sanchez-Luque FJ, Kempen MHC, Gerdes P, Vargas-Landin DB, Richardson SR, Troskie RL, Jesuadian JS, Cheetham SW, Carreira PE, Salvador-Palomeque C, García-Cañadas M, Muñoz-Lopez M, Sanchez L, Lundberg M, Macia A, Heras SR, Brennan PM, Lister R, Garcia-Perez JL, Ewing AD, Faulkner GJ
(2019)
LINE-1 Evasion of Epigenetic Repression in Humans.
Molecular Cell
75(3):590-604.e12.
|
|
|
2019
|
Watts-Williams SJ, Smith FA, Jakobsen I
(2019)
Soil phosphorus availability is a driver of the responses of maize (Zea mays) to elevated CO2 concentration and arbuscular mycorrhizal colonisation
Symbiosis
77:73–82.
|
|
|
2019
|
Watts-Williams SJ, Emmett BD, Levesque-Tremblay V, MacLean AM, Sun X, Satterlee JW, Fei Z, Harrison MJ
(2019)
Diverse Sorghum bicolor accessions show marked variation in growth and transcriptional responses to arbuscular mycorrhizal fungi
Plant, Cell & Environment
42(5).
|
|
|
2019
|
James AM, Haywood J, Leroux J, Ignasiak K, Elliott AG, Schmidberger JW, Fisher MF, Nonis SG, Fenske R, Bond CS, Mylne JS
(2019)
The macrocyclizing protease butelase 1 remains autocatalytic and reveals the structural basis for ligase activity.
The Plant Journal
98(6):988-999.
|
|
|
2019
|
Dosselli R, Grassl J, den Boer SPA, Kratz M, Moran JM, Boomsma JJ, Baer B
(2019)
Protein-Level Interactions as Mediators of Sexual Conflict in Ants.
Molecular and Cellular Proteomics
18(Suppl 1):S34-S45.
|
|
|
2019
|
Osorio MB, Ng S, Berkowitz O, De Clercq I, Mao C, Shou H, Whelan J, Jost R
(2019)
SPX4 Acts on PHR1-Dependent and -Independent Regulation of Shoot Phosphorus Status in Arabidopsis.
Plant Physiology
181(1):332-352.
|
|
|
2019
|
Coetzee ZA, Walker RR, Liao S, Barril C, Deloire AJ, Clarke SJ, Tyerman SD, Rogiers SY
(2019)
Expression Patterns of Genes Encoding Sugar and Potassium Transport Proteins are Simultaneously Up- or Downregulated When Carbon and Potassium Availability is Modified in Shiraz (Vitis vinifera L.) Berries.
Plant and Cell Physiology
60(10):2331-2342.
|
|
|
2019
|
Dechorgnat J, Francis KL, Dhugga KS, Rafalski JA, Tyerman SD, Kaiser BN
(2019)
Tissue and nitrogen-linked expression profiles of ammonium and nitrate transporters in maize.
BMC Plant Biology
19(1):206.
|
|
|
2019
|
Cao S, Xiao Z, Jiranek V, Tyerman SD
(2019)
The VvBAP1 gene is identified as a potential inhibitor of cell death in grape berries.
Functional Plant Biology
46(5):428-442.
|
|
|
2019
|
Rungrat T, Almonte AA, Cheng R, Gollan PJ, Stuart T, Aro EM, Borevitz JO, Pogson B, Wilson PB
(2019)
A Genome-Wide Association Study of Non-Photochemical Quenching in response to local seasonal climates in <i>Arabidopsis thaliana</i>.
Plant Direct
3(5):e00138.
|
|
|
2019
|
von Takach Dukai B, Jack C, Borevitz J, Lindenmayer DB, Banks SC
(2019)
Pervasive admixture between eucalypt species has consequences for conservation and assisted migration.
Evolutionary Applications
12(4):845-860.
|
|
|
2019
|
Kerbler SM, Taylor NL, Millar AH
(2019)
Cold sensitivity of mitochondrial ATP synthase restricts oxidative phosphorylation in Arabidopsis thaliana.
The New phytologist
221(4):1776-1788.
|
|
|
2019
|
Ruwe H, Gutmann B, Schmitz-Linneweber C, Small I, Kindgren P
(2019)
The E-domain of CRR2 participates in sequence-specific recognition of RNA in plastids.
The New phytologist
222(1):218-229.
|
|
|
2019
|
Melonek J, Zhou R, Bayer PE, Edwards D, Stein N, Small I
(2019)
High intraspecific diversity of Restorer-of-fertility-like genes in barley.
The Plant Journal
97(2):281-295.
|
|
|
2019
|
O'Leary BM, Asao S, Harvey Millar AH, Atkin OK
(2019)
Core principles which explain variation in respiration across biological scales.
The New phytologist
222(2):670-686.
|
|
|
2019
|
Bloomfield KJ, Prentice IC, Cernusak LA, Eamus D, Medlyn BE, Rumman R, Wright IJ, Boer MM, Cale P, Cleverly J, Egerton JJG, Ellsworth DS, Evans BJ, Hayes LS, Hutchinson MF, Liddell MJ, Macfarlane C, Meyer WS, Togashi HF, Wardlaw T, Zhu L, Atkin OK
(2019)
The validity of optimal leaf traits modelled on environmental conditions.
The New phytologist
221(3):1409-1423.
|
|
|
2019
|
Shadmany M, Boykin LM, Muhamad R, Omar D
(2019)
Genetic Diversity of Bemisia tabaci (Hemiptera: Aleyrodidae) Species Complex Across Malaysia.
Journal of Economic Entomology
112(1):75-84.
|
|
|
2019
|
Eriksson D, Kershen D, Nepomuceno A, Pogson BJ, Prieto H, Purnhagen K, Smyth S, Wesseler J, Whelan A
(2019)
A comparison of the EU regulatory approach to directed mutagenesis with that of other jurisdictions, consequences for international trade and potential steps forward.
The New phytologist
222(4):1673-1684.
|
|
|
2019
|
Wilson PB, Streich JC, Murray KD, Eichten SR, Cheng R, Aitken NC, Spokas K, Warthmann N, Gordon SP, Contributors A, Vogel JP, Borevitz JO
(2019)
Global Diversity of the Brachypodium Species Complex as a Resource for Genome Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.
GENETICS
211(1):317-331.
|
|
|
2019
|
Sanchez-Puerta MV, Edera A, Gandini CL, Williams AV, Howell KA, Nevill PG, Small I
(2019)
Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae).
Molecular Phylogenetics and Evolution
132:243-250.
|
|
|
2019
|
Xu Y, Berkowitz O, Narsai R, De Clercq I, Hooi M, Bulone V, Van Breusegem F, Whelan J, Wang Y
(2019)
Mitochondrial function modulates touch signalling in Arabidopsis thaliana.
The Plant Journal
97(4):623-645.
|
|
|
2018
|
Drake JE, Tjoelker MG, Vårhammar A, Medlyn BE, Reich PB, Leigh A, Pfautsch S, Blackman CJ, López R, Aspinwall MJ, Crous KY, Duursma RA, Kumarathunge D, De Kauwe MG, Jiang M, Nicotra AB, Tissue DT, Choat B, Atkin OK, Barton CVM
(2018)
Trees Tolerate an Extreme Heatwave via Sustained Transpirational Cooling and Increased Leaf Thermal Tolerance.
Global change biology
24(6):2390-2402.
|
|
|
2018
|
O'Leary B, Plaxton W
(2018)
Mechanisms and Functions of Post-translational Enzyme Modifications in the Organization and Control of Plant Respiratory Metabolism
BOOK
Book chapter: O’Leary B.M., Plaxton W.C. (2017) Mechanisms and Functions of Post-translational Enzyme Modifications in the Organization and Control of Plant Respiratory Metabolism. In: Tcherkez G., Ghashghaie J. (eds) Plant Respiration: Metabolic Fluxes and Carbon Balance. Advances in Photosynthesis and Respiration (Including Bioenergy and Related Processes), vol 43. Springer, Cham.
|
|
|
2018
|
Stassen JHM, López A, Jain R, Pascual-Pardo D, Luna E, Smith LM, Ton J
(2018)
The relationship between transgenerational acquired resistance and global DNA methylation in Arabidopsis
Scientific Reports
8(1):14761.
|
|
|
2018
|
Waszczak C, Carmody M, Kangasjarvi J
(2018)
Reactive Oxygen Species in Plant Signaling
Annual Review of Plant Biology
69:209-236.
|
|
|
2018
|
Honkanen S, Thamm A, Arteaga-Vazquez MA, Dolan L
(2018)
Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants
eLIFE
7:e38529.
|
|
|
2018
|
Broda M, Van Aken O
(2018)
Studying Retrograde Signaling in Plants
Methods in Molecular Biology
1743:73-85.
|
|
|
2018
|
Zhu L, Bloomfield KJ, Hocart CH, Egerton JJG, O'Sullivan OS, Penillard A, Weerasinghe LK, Atkin OK
(2018)
Plasticity of photosynthetic heat tolerance in plants adapted to thermally contrasting biomes.
Global change biology
41(6):1251-1262.
|
|
|
2018
|
Henderson SW, Wege S, Gilliham M
(2018)
Plant Cation-Chloride Cotransporters (CCC): Evolutionary Origins and Functional Insights.
International Journal of Molecular Sciences
19(2).
|
|
|
2018
|
Broda M, Millar AH, Van Aken O
(2018)
Mitophagy: A Mechanism for Plant Growth and Survival.
Trends in Plant Science
23(5):434-450.
|
|
|
2018
|
de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Hong F, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R
(2018)
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.
Nature Communications
9(1):1341.
|
|
|
2018
|
Stuart T, Buckberry S, Lister R
(2018)
Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data.
Methods in Molecular Biology
1767:299-310.
|
|
|
2018
|
Vargas-Landin DB, Pflüger J, Lister R
(2018)
Generation of Whole Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis.
Methods in Molecular Biology
1767():291-298.
|
|
|
2018
|
Bahar NHA, Hayes L, Scafaro AP, Atkin OK, Evans JR
(2018)
Mesophyll conductance does not contribute to greater photosynthetic rate per unit nitrogen in temperate compared with tropical evergreen wet-forest tree leaves.
The New phytologist
218(2):492-505.
|
|
|
2018
|
Ramesh SA, Kamran M, Sullivan W, Chirkova L, Okamoto M, Degryse F, McLauchlin M, Gilliham M, Tyerman SD
(2018)
Aluminium-Activated Malate Transporters Can Facilitate GABA Transport.
The Plant Cell
30(5):1147-1164.
|
|
|
2018
|
Byrt CS, Munns R, Burton RA, Gilliham M, Wege S
(2018)
Root cell wall solutions for crop plants in saline soils.
Plant Science
269:47-55.
|
|
|
2018
|
Macfadyen S, Paull C, Boykin LM, De Barro P, Maruthi MN, Otim M, Kalyebi A, Vassão DG, Sseruwagi P, Tay WT, Delatte H, Seguni Z, Colvin J, Omongo CA
(2018)
Cassava whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) in East African farming landscapes: a review of the factors determining abundance.
Bulletin of Entomological Research
108(5):565-582.
|
|
|
2018
|
Hanchi M, Thibaud MC, Légeret B, Kuwata K, Pochon N, Beisson F, Cao A, Cuyas L, David P, Doerner P, Ferjani A, Lai F, Li-Beisson Y, Mutterer J, Philibert M, Raghothama KG, Rivasseau C, Secco D, Whelan J, Nussaume L, Javot H
(2018)
The Phosphate Fast-Responsive Genes <i>PECP1</i> and <i>PPsPase1</i> Affect Phosphocholine and Phosphoethanolamine Content.
Plant Physiology
176(4):2943-2962.
|
|
|
2018
|
Wang Y, Berkowitz O, Selinski J, Xu Y, Hartmann A, Whelan J
(2018)
Stress responsive mitochondrial proteins in Arabidopsis thaliana.
Free Radical Biology & Medicine
122:28-39.
|
|
|
2018
|
Belt K, Van Aken O, Murcha MW, Millar AH, Huang S
(2018)
An assembly factor promotes assembly of flavinated SDH1 into the succinate dehydrogenase complex.
Plant Physiology
177(4):1439-1452.
|
|
|
2018
|
Li L, Aro EM, Millar AH
(2018)
Mechanisms of Photodamage and Protein Turnover in Photoinhibition.
Trends in Plant Science
23(8):667-676.
|
|
|
2018
|
Huang S, Shingaki-Wells RN, Petereit J, Alexova R, Millar AH
(2018)
Temperature-dependent metabolic adaptation of Triticum aestivum seedlings to anoxia.
Scientific Reports
8(1):6151.
|
|
|
2018
|
Ganguly DR, Crisp PA, Eichten SR, Pogson BJ
(2018)
Maintenance of pre-existing DNA methylation states through recurring excess-light stress.
Plant, Cell & Environment
41(7):1657-1672.
|
|
|
2018
|
Dechorgnat J, Francis KL, Dhugga KS, Rafalski JA, Tyerman SD, Kaiser BN
(2018)
Root Ideotype Influences Nitrogen Transport and Assimilation in Maize.
Frontiers in Plant Science
9():531.
|
|
|
2018
|
Xiao Z, Rogiers SY, Sadras VO, Tyerman SD
(2018)
Hypoxia in grape berries: the role of seed respiration and lenticels on the berry pedicel and the possible link to cell death.
Journal of Experimental Botany
69(8):2071-2083.
|
|
|
2018
|
Pflueger C, Tan D, Swain T, Nguyen T, Pflueger J, Nefzger C, Polo JM, Ford E, Lister R
(2018)
A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs.
Genome Research
28(8):1193-1206.
|
|
|
2018
|
Li FW, Brouwer P, Carretero-Paulet L, Cheng S, De Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, Depamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, Mcdowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van De Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM
(2018)
Fern genomes elucidate land plant evolution and cyanobacterial symbioses.
Nature Plants
4(7):460-472.
|
|
|
2018
|
Mader M, Pakull B, Blanc-Jolivet C, Paulini-Drewes M, Bouda ZH, Degen B, Small I, Kersten B
(2018)
Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses.
International Journal of Molecular Sciences
19(3).
|
|
|
2018
|
Murray KD, Borevitz JO
(2018)
Axe: rapid, competitive sequence read demultiplexing using a trie.
Bioinformatics
34(22):3924-3925.
|
|
|
2018
|
Almonte AA, Borevitz JO
(2018)
Adaptation genomics: The angel is in the details.
Plant, Cell & Environment
41(10):2244-2246.
|
|
|
2018
|
Supple MA, Bragg JG, Broadhurst LM, Nicotra AB, Byrne M, Andrew RL, Widdup A, Aitken NC, Borevitz JO
(2018)
Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change
eLIFE
7:e31835.
|
|
|
2018
|
Selinski J, Scheibe R, Day DA, Whelan J
(2018)
Alternative Oxidase Is Positive for Plant Performance.
Trends in Plant Science
23(7):588-597.
|
|
|
2018
|
Han Y, Yin S, Huang L, Wu X, Zeng J, Liu X, Qiu L, Munns R, Chen ZH, Zhang G
(2018)
A Sodium Transporter HvHKT1;1 Confers Salt Tolerance in Barley via Regulating Tissue and Cell Ion Homeostasis.
Plant and Cell Physiology
59(10):1976-1989.
|
|
|
2018
|
Szappanos HC, Muralidharan P, Ingley E, Petereit J, Millar AH, Hool LC
(2018)
Author Correction: Identification of a novel cAMP dependent protein kinase A phosphorylation site on the human cardiac calcium channel.
Scientific Reports
8(1):7207.
|
|
|
2018
|
de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Li H, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R
(2018)
Author Correction: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.
Nature Communications
9(1):1811.
|
|
|
2018
|
Sun YK, Gutmann B, Yap A, Kindgren P, Small I
(2018)
Editing of Chloroplast <i>rps14</i> by PPR Editing Factor EMB2261 Is Essential for <i>Arabidopsis</i> Development.
Frontiers in Plant Science
9:841.
|
|
|
2018
|
Yao J, Mashiguchi K, Scaffidi A, Akatsu T, Melville KT, Morita R, Morimoto Y, Smith SM, Seto Y, Flematti GR, Yamaguchi S, Waters MT
(2018)
An allelic series at the KARRIKIN INSENSITIVE 2 locus of Arabidopsis thaliana decouples ligand hydrolysis and receptor degradation from downstream signalling.
The Plant Journal
96(1):75-89.
|
|
|
2018
|
Wang L, Waters MT, Smith SM
(2018)
Karrikin-KAI2 signalling provides Arabidopsis seeds with tolerance to abiotic stress and inhibits germination under conditions unfavourable to seedling establishment.
The New phytologist
219(2):605-618.
|
|
|
2018
|
Ghifari AS, Gill-Hille M, Murcha MW
(2018)
Plant mitochondrial protein import: the ins and outs.
Biochemical Journal
475(13):2191-2208.
|
|
|
2018
|
Corral MG, Haywood J, Stehl LH, Stubbs KA, Murcha MW, Mylne JS
(2018)
Targeting plant DIHYDROFOLATE REDUCTASE with antifolates and mechanisms for genetic resistance.
The Plant Journal
(in press).
|
|
|
2018
|
Lyu W, Selinski J, Li L, Day DA, Murcha MW, Whelan J, Wang Y
(2018)
Isolation and Respiratory Measurements of Mitochondria from Arabidopsis thaliana.
Journal of Visualized Experiments
(131):.
|
|
|
2018
|
Franke B, Mylne JS, Rosengren KJ
(2018)
Buried treasure: biosynthesis, structures and applications of cyclic peptides hidden in seed storage albumins.
Natural Product Reports
35(2):137-146.
|
|
|
2018
|
Corral MG, Leroux J, Tresch S, Newton T, Stubbs KA, Mylne JS
(2018)
A herbicide structure-activity analysis of the antimalarial lead compound MMV007978 against Arabidopsis thaliana.
Pest Management Science
74(7):1558-1563.
|
|
|
2018
|
James AM, Haywood J, Mylne JS
(2018)
Macrocyclization by asparaginyl endopeptidases.
The New phytologist
218(3):923-928.
|
|
|
2018
|
Taghavi Namin S, Esmaeilzadeh M, Najafi M, Brown TB, Borevitz JO
(2018)
Deep phenotyping: deep learning for temporal phenotype/genotype classification.
Plant Methods
14():66.
|
|
|
2018
|
Asif MA, Schilling RK, Tilbrook J, Brien C, Dowling K, Rabie H, Short L, Trittermann C, Garcia A, Barrett-Lennard EG, Berger B, Mather DE, Gilliham M, Fleury D, Tester M, Roy SJ, Pearson AS
(2018)
Mapping of novel salt tolerance QTL in an Excalibur × Kukri doubled haploid wheat population.
Theoretical and Applied Genetics
131(10):2179-2196.
|
|
|
2018
|
Rossitto De Marchi B, Kinene T, Mbora Wainaina J, Krause-Sakate R, Boykin L
(2018)
Comparative transcriptome analysis reveals genetic diversity in the endosymbiont Hamiltonella between native and exotic populations of Bemisia tabaci from Brazil.
PLoS ONE
13(7):e0201411.
|
|
|
2018
|
Wainaina JM, Ateka E, Makori T, Kehoe MA, Boykin LM
(2018)
Phylogenomic relationship and evolutionary insights of sweet potato viruses from the western highlands of Kenya.
Peerj
6:e5254.
|
|
|
2018
|
Wainaina JM, De Barro P, Kubatko L, Kehoe MA, Harvey J, Karanja D, Boykin LM
(2018)
Global phylogenetic relationships, population structure and gene flow estimation of Trialeurodes vaporariorum (Greenhouse whitefly).
Bulletin of Entomological Research
108(1):5-13.
|
|
|
2018
|
Wang D, Gu J, David R, Wang Z, Yang S, Searle IR, Zhu JK, Timmis JN
(2018)
Experimental reconstruction of double-stranded break repair-mediated plastid DNA insertion into the tobacco nucleus.
The Plant Journal
93(2):227-234.
|
|
|
2018
|
Phua SY, Pornsiriwong W, Chan KX, Estavillo GM, Pogson BJ
(2018)
Development of strategies for genetic manipulation and fine-tuning of a chloroplast retrograde signal 3'-phosphoadenosine 5'-phosphate.
Plant Direct
2(1):e00031.
|
|
|
2018
|
Opalińska M, Parys K, Murcha MW, Jańska H
(2018)
The plant i-AAA protease controls the turnover of an essential mitochondrial protein import component.
Journal of Cell Science
131(2). pii: jcs200733.
|
|
|
2018
|
Crisp PA, Smith AB, Ganguly DR, Murray KD, Eichten SR, Millar AA, Pogson BJ
(2018)
RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling.
Plant Physiology
178(4):1614-1630.
|
|
|
2018
|
Dubreuil C, Jin X, Barajas-López JD, Hewitt TH, Tanz S, Dobrenel T, Schröder W, Hanson J, Pesquet E, Grönlund A, Small ID, Strand A
(2018)
Establishment of photosynthesis is controlled by two distinct regulatory phases.
Plant Physiology
176(2):1199-1214.
|
|
|
2018
|
Phua SY, Yan D, Chan KX, Estavillo GM, Nambara E, Pogson BJ
(2018)
The <i>Arabidopsis</i> SAL1-PAP Pathway: A Case Study for Integrating Chloroplast Retrograde, Light and Hormonal Signaling in Modulating Plant Growth and Development?
Frontiers in Plant Science
9:1171.
|
|
|
2018
|
Hrmova M, Gilliham M
(2018)
Plants fighting back: to transport or not to transport, this is a structural question.
Current Opinion in Plant Biology
46():68-76.
|
|
|
2018
|
de Moraes LA, Muller C, Bueno RCOF, Santos A, Bello VH, De Marchi BR, Watanabe LFM, Marubayashi JM, Santos BR, Yuki VA, Takada HM, de Barros DR, Neves CG, da Silva FN, Gonçalves MJ, Ghanim M, Boykin L, Pavan MA, Krause-Sakate R
(2018)
Distribution and phylogenetics of whiteflies and their endosymbiont relationships after the Mediterranean species invasion in Brazil.
Scientific Reports
8(1):14589.
|
|
|
2018
|
Dong C, He F, Berkowitz O, Liu J, Cao P, Tang M, Shi H, Wang W, Li Q, Shen Z, Whelan J, Zheng L
(2018)
Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<i>Oryza sativa</i>).
The Plant Cell
30(10):2267-2285.
|
|
|
2018
|
Kmiec B, Branca RMM, Berkowitz O, Li L, Wang Y, Murcha MW, Whelan J, Lehtiö J, Glaser E, Teixeira PF
(2018)
Accumulation of endogenous peptides triggers a pathogen stress response in Arabidopsis thaliana.
The Plant Journal
96(4):705-715.
|
|
|
2018
|
Lloyd JPB, Lang D, Zimmer AD, Causier B, Reski R, Davies B
(2018)
The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens.
Global change biology
46(11):5822-5836.
|
|
|
2018
|
Lloyd JPB
(2018)
The evolution and diversity of the nonsense-mediated mRNA decay pathway.
F1000Research
7():1299.
|
|
|
2018
|
Watts-Williams SJ, Cavagnaro TR
(2018)
Arbuscular mycorrhizal fungi increase grain zinc concentration and modify the expression of root ZIP transporter genes in a modern barley (Hordeum vulgare) cultivar.
Plant Science
274():163-170.
|
|
|
2018
|
Colas Des Francs-Small C, Vincis Pereira Sanglard L, Small I
(2018)
Targeted cleavage of <i>nad6</i> mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria.
Communications Biology
1():166.
|
|
|
2018
|
Svenningsen NB, Watts-Williams SJ, Joner EJ, Battini F, Efthymiou A, Cruz-Paredes C, Nybroe O, Jakobsen I
(2018)
Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota.
The ISME Journal
12(5):1296-1307.
|
|
|
2018
|
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, De La Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, Van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M
(2018)
Amphioxus functional genomics and the origins of vertebrate gene regulation.
Nature
564(7734):64-70.
|
|
|
2018
|
Wu D, Liang W, Zhu W, Chen M, Ferrándiz C, Burton RA, Dreni L, Zhang D
(2018)
Loss of LOFSEP Transcription Factor Function Converts Spikelet to Leaf-Like Structures in Rice.
Plant Physiology
176(2):1646-1664.
|
|
|
2018
|
Rodríguez-Calcerrada J, Rodrigues AM, Perdiguero P, António C, Atkin OK, Li M, Collada C, Gil L
(2018)
A molecular approach to drought-induced reduction in leaf CO2 exchange in drought-resistant Quercus ilex.
Physiologia Plantarum
162(4):394-408.
|
|
|
2018
|
Lim WL, Collins HM, Singh RR, Kibble NAJ, Yap K, Taylor J, Fincher GB, Burton RA
(2018)
Method for hull-less barley transformation and manipulation of grain mixed-linkage beta-glucan.
Journal of Integrative Plant Biology
60(5):382-396.
|
|
|
2018
|
Wood JA, Tan HT, Collins HM, Yap K, Khor SF, Lim WL, Xing X, Bulone V, Burton RA, Fincher GB, Tucker MR
(2018)
Genetic and environmental factors contribute to variation in cell wall composition in mature desi chickpea (Cicer arietinum L.) cotyledons.
Plant, Cell & Environment
41(9):2195-2208.
|
|
|
2018
|
Roberts AW, Lahnstein J, Hsieh YSY, Xing X, Yap K, Chaves AM, Scavuzzo-Duggan TR, Dimitroff G, Lonsdale A, Roberts E, Bulone V, Fincher GB, Doblin MS, Bacic A, Burton RA
(2018)
Functional Characterization of a Glycosyltransferase from the Moss Physcomitrella patens Involved in the Biosynthesis of a Novel Cell Wall Arabinoglucan
The Plant Cell
30(6):1293-1308.
|
|
|
2018
|
Little A, Schwerdt JG, Shirley NJ, Khor SF, Neumann K, O'Donovan LA, Lahnstein J, Collins HM, Henderson M, Fincher GB, Burton RA
(2018)
Revised Phylogeny of the Cellulose Synthase Gene Superfamily: Insights into Cell Wall Evolution
Plant Physiology
177(3):1124-1141.
|
|
|
2018
|
Aubert MK, Coventry S, Shirley NJ, Betts NS, Würschum T, Burton RA, Tucker MR
(2018)
Differences in hydrolytic enzyme activity accompany natural variation in mature aleurone morphology in barley (Hordeum vulgare L.).
Scientific Reports
8(1):11025.
|
|
|
2018
|
Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA, Stein N, Mascher M, Himmelbach A, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M, Lang D, Spannagl M, Appels R, Fischer I, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J, Tiwari V, Gill B, Paux E, Poland J, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J, Sourdille P, Darrier B, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V, Barabaschi D, Cattivelli L, Hernandez P, Galvez S, Budak H, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G, Small I, Melonek J, Zhou R, Juhász A, Belova T, Appels R, Olsen OA, Kanyuka K, King R, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D, Rohde A, Golds T, Doležel J, Čížková J, Tibbits J, Budak H, Akpinar BA, Biyiklioglu S, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J, Berges H, Bellec A, Vautrin S, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P, Gill B, Kaur G, Luo M, Sehgal S, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S, Gill B, Kaur G, Luo M, Sehgal S, Bartoš J, Holušová K, Plíhal O, Clark MD, Heavens D, Kettleborough G, Wright J, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C
(2018)
Shifting the limits in wheat research and breeding using a fully annotated reference genome.
Science
361(6403).
|
|
|
2018
|
Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C
(2018)
The transcriptional landscape of polyploid wheat.
Science
361(6403).
|
|
|
2018
|
Xu B, Waters S, Byrt CS, Plett D, Tyerman SD, Tester M, Munns R, Hrmova M, Gilliham M
(2018)
Structural variations in wheat HKT1;5 underpin differences in Na+ transport capacity.
Cellular and Molecular Life Sciences
75(6):1133-1144.
|
|
|
2018
|
Robinson AJ, Tamiru M, Salby R, Bolitho C, Williams A, Huggard S, Fisch E, Unsworth K, Whelan J, Lewsey MG
(2018)
AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.
BMC Plant Biology
18(1):200.
|
|
|
2018
|
Henderson SW, Dunlevy JD, Wu Y, Blackmore DH, Walker RR, Edwards EJ, Gilliham M, Walker AR
(2018)
Functional differences in transport properties of natural HKT1;1 variants influence shoot Na+ exclusion in grapevine rootstocks.
The New phytologist
217(3):1113-1127.
|
|
|
2018
|
Kawasaki A, Okada S, Zhang C, Delhaize E, Mathesius U, Richardson AE, Watt M, Gilliham M, Ryan PR
(2018)
A sterile hydroponic system for characterising root exudates from specific root types and whole-root systems of large crop plants.
Plant Methods
14():114.
|
|
|
2018
|
Fisher MF, Zhang J, Taylor NL, Howard MJ, Berkowitz O, Debowski AW, Behsaz B, Whelan J, Pevzner PA, Mylne JS
(2018)
A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch.
Plant Direct
2(2):.
|
|
|
2018
|
Liang LL, Arcus VL, Heskel MA, O'Sullivan OS, Weerasinghe LK, Creek D, Egerton JJG, Tjoelker MG, Atkin OK, Schipper LA
(2018)
Macromolecular rate theory (MMRT) provides a thermodynamics rationale to underpin the convergent temperature response in plant leaf respiration.
Global change biology
24(4):1538-1547.
|
|
|
2018
|
Rumman R, Atkin OK, Bloomfield KJ, Eamus D
(2018)
Variation in bulk-leaf 13 C discrimination, leaf traits and water-use efficiency-trait relationships along a continental-scale climate gradient in Australia.
Global change biology
24(3):1186-1200.
|
|
|
2018
|
Grassl J, Holt S, Cremen N, Peso M, Hahne D, Baer B
(2018)
Synergistic effects of pathogen and pesticide exposure on honey bee (Apis mellifera) survival and immunity.
Journal of Invertebrate Pathology
159:78-86.
|
|
|
2018
|
Selinski J, Hartmann A, Deckers-Hebestreit G, Day DA, Whelan J, Scheibe R
(2018)
Alternative Oxidase Isoforms Are Differentially Activated by Tricarboxylic Acid Cycle Intermediates.
Plant Physiology
176(2):1423-1432.
|
|
|
2017
|
Cheng R, Doerge RW, Borevitz J
(2017)
Novel Resampling Improves Statistical Power for Multiple-Trait QTL Mapping.
G3
7(3):813-822.
|
|
|
2017
|
Rubenach AJ, Hecht V, Vander Schoor JK, Liew LC, Aubert G, Burstin J, Weller JL
(2017)
EARLY FLOWERING3 Redundancy Fine-Tunes Photoperiod Sensitivity
Plant Physiology
173(4):2253-2264.
|
|
|
2017
|
Nelson MN, Książkiewicz M, Rychel S, Besharat N, Taylor CM, Wyrwa K, Jost R, Erskine W, Cowling WA, Berger JD, Batley J, Weller JL, Naganowska B, Wolko B
(2017)
The loss of vernalization requirement in narrow-leafed lupin is associated with a deletion in the promoter and de-repressed expression of a Flowering Locus T (FT) homologue
The New phytologist
213(1):220-232.
|
|
|
2017
|
Kerbler SM, Taylor NL
(2017)
Isolation of Mitochondria from Model and Crop Plants
Methods in Molecular Biology
1670:115-142.
|
|
|
2017
|
Teixeira PF, Kmiec B, Branca RM, Murcha MW, Byzia A, Ivanova A, Whelan J, Drag M, Lehtiö J, Glaser E
(2017)
A multi-step peptidolytic cascade for amino acid recovery in chloroplasts.
Nature Chemical Biology
13(1):15-17.
|
|
|
2017
|
Lehniger MK, Finster S, Melonek J, Oetke S, Krupinska K, Schmitz-Linneweber C
(2017)
Global RNA association with the transcriptionally active chromosome of chloroplasts
Plant Molecular Biology
Plant Mol Biol.
|
|
|
2017
|
Xu Y, Li SF, Parish RW
(2017)
Regulation of gene expression by manipulating transcriptional repressor activity using a novel CoSRI technology
Plant Biotechnology Journal
15(7):879-893.
|
|
|
2017
|
Behera S, Long Y, Schmitz-Thom I, Wang XP, Zhang C, Li H, Steinhorst L, Manishankar P, Ren XL, Offenborn JN, Wu WH, Kudla J, Wang Y
(2017)
Two spatially and temporally distinct Ca(2+) signals convey Arabidopsis thaliana responses to K(+) deficiency.
The New phytologist
213(2):739-750.
|
|
|
2017
|
Paynter E, Millar AH, Welch M, Baer-Imhoof B, Cao D, Baer B
(2017)
Insights into the molecular basis of long-term storage and survival of sperm in the honeybee (Apis mellifera).
Scientific Reports
7:40236.
|
|
|
2017
|
Sykes T, Yates S, Nagy I, Asp T, Small I, Studer B
(2017)
In-silico identification of candidate genes for fertility restoration in cytoplasmic male sterile perennial ryegrass (Lolium perenne L.).
Genome Biology and Evolution
9(2):351-362.
|
|
|
2017
|
Pružinská A, Shindo T, Niessen S, Kaschani F, Tóth R, Millar AH, van der Hoorn RA
(2017)
Major Cys protease activities are not essential for senescence in individually darkened Arabidopsis leaves.
BMC Plant Biology
17(1):4.
|
|
|
2017
|
Li L, Millar AH, Huang S
(2017)
Mitochondrial Lon1 has a role in homeostasis of the mitochondrial ribosome and pentatricopeptide repeat proteins in plants.
Plant Signaling and Behavior
12(2):e1276686.
|
|
|
2017
|
Hooper CM, Castleden IR, Tanz SK, Aryamanesh N, Millar AH
(2017)
SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations.
Nucleic Acids Research
45(D1):D1064-D1074.
|
|
|
2017
|
Duncan O, Millar AH, Taylor NL
(2017)
Isolation of Mitochondria, Their Sub-Organellar Compartments, and Membranes.
Methods in Molecular Biology
1511:83-96.
|
|
|
2017
|
Millar AH, Taylor NL
(2017)
The Isolation of Plant Organelles and Structures in the Post-genomic Era.
Methods in Molecular Biology
1511:1-11.
|
|
|
2017
|
Li B, Tester M, Gilliham M
(2017)
Chloride on the Move.
Trends in Plant Science
22(3):236-248.
|
|
|
2017
|
Yin G, Xin X, Fu S, An M, Wu S, Chen X, Zhang J, He J, Whelan J, Lu X
(2017)
Proteomic and Carbonylation Profile Analysis at the Critical Node of Seed Ageing in Oryza sativa.
Scientific Reports
7:40611.
|
|
|
2017
|
Ying Y, Yue W, Wang S, Li S, Wang M, Zhao Y, Wang C, Mao C, Whelan J, Shou H
(2017)
Two h-Type Thioredoxins Interact with the E2 Ubiquitin Conjugase PHO2 to Fine-Tune Phosphate Homeostasis in Rice.
Plant Physiology
173(1):812-824.
|
|
|
2017
|
Khan AL, Waqas M, Asaf S, Kamran M, Shahzad R, Bilal S, Khan MA, Kang S, Kim Y, Yun B, Al-Rawahi A, Al-Harrasi A, Lee I
(2017)
Plant growth-promoting endophyte Sphingomonas sp. LK11 alleviates salinity stress in Solanum pimpinellifolium
Environmental and Experimental Botany
133:58-69.
|
|
|
2017
|
Buckberry S, Bianco-Miotto T, Bent SJ, Clifton V, Shoubridge C, Shankar K, Roberts CT
(2017)
Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation.
BMC Genomics
18(1):10.
|
|
|
2017
|
David R, Burgess A, Parker B, Li J, Pulsford K, Sibbritt T, Preiss T, Searle IR
(2017)
Transcriptome-Wide Mapping of RNA 5-Methylcytosine in Arabidopsis mRNAs and Noncoding RNAs.
The Plant Cell
29(3):445-460.
|
|
|
2017
|
Martin A, Brown CW, Nguyen DQ, Palmer WM, Furbank RT, Byrt CS, Lambrides CJ, Grof CPL
(2017)
Cell wall development in an elongating internode of setaria
Genetics and Genomics of Setaria
19:211-238.
|
|
|
2017
|
Shabala S, Munns R
(2017)
Salinity Stress: Physiological Constraints and Adaptive Mechanisms
Plant Stress Physiology
Chapter 2, 2nd Edition (S. Shabala, Ed.) CAB International. pp 24-63..
|
|
|
2017
|
Li L, Nelson CJ, Trösch J, Castleden I, Huang S, Millar AH
(2017)
Protein Degradation Rate in <i>Arabidopsis thaliana</i> Leaf Growth and Development.
The Plant Cell
29(2):207-228.
|
|
|
2017
|
Belt K, Huang S, Thatcher LF, Casarotto H, Singh K, Van Aken O, Millar AH
(2017)
Salicylic acid-dependent plant stress signalling via mitochondrial succinate dehydrogenase.
Plant Physiology
173(4):2029-2040.
|
|
|
2017
|
Cai S, Chen G, Wang Y, Huang Y, Marchant B, Wang Y, Yang Q, Dai F, Hills A, Franks PJ, Nevo E, Soltis D, Soltis P, Sessa E, Wolf PG, Xue D, Zhang G, Pogson BJ, Blatt MR, Chen ZH
(2017)
Evolutionary Conservation of ABA Signaling for Stomatal Closure in Ferns.
Plant Physiology
174(2):732-747.
|
|
|
2017
|
Zhang X, Ivanova A, Vandepoele K, Radomiljac J, Van De Velde J, Berkowitz O, Willems P, Xu Y, Ng S, Van Aken O, Duncan O, Zhang B, Storme V, Chan KX, Vaneechoutte D, Pogson BJ, Van Breusegem F, Whelan J, De Clercq I
(2017)
The Transcription Factor MYB29 Is a Regulator of <i>ALTERNATIVE OXIDASE1a</i>.
Plant Physiology
173(3):1824-1843.
|
|
|
2017
|
Yue W, Ying Y, Wang C, Zhao Y, Dong C, Whelan J, Shou H
(2017)
OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.
The Plant Journal
90(6):1040-1051.
|
|
|
2017
|
Stoll K, Jonietz C, Schleicher S, des Francs-Small CC, Small I, Binder S
(2017)
In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5' termini of ccmB transcripts.
Plant Molecular Biology
93(6):659-668.
|
|
|
2017
|
Tonti-Filippini J, Nevill PG, Dixon K, Small I
(2017)
What can we do with 1000 plastid genomes?
The Plant Journal
90(4):808-818.
|
|
|
2017
|
Blomme J, Van Aken O, Van Leene J, Jégu T, De Rycke RM, De Bruyne M, Vercruysse J, Nolf J, Van Daele T, De Milde L, Vermeersch M, Colas des Francs-Small C, De Jaeger G, Benhamed M, Millar AH, Inzé D, Gonzalez N
(2017)
The Mitochondrial DNA (mtDNA)-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination.
The Plant Cell
29(5):1137-1156.
|
|
|
2017
|
Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD
(2017)
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.
Genome Research
27(5):885-896.
|
|
|
2017
|
Scafaro AP, Negrini ACA, O'Leary B, Rashid FAA, Hayes L, Fan Y, Zhang Y, Chochois V, Badger MR, Millar AH, Atkin OK
(2017)
The combination of gas-phase fluorophore technology and automation to enable high-throughput analysis of plant respiration.
Plant Methods
13:16.
|
|
|
2017
|
Pornsiriwong W, Estavillo GM, Chan KX, Tee EE, Ganguly D, Crisp PA, Phua SY, Zhao C, Qiu J, Park J, Yong MT, Nisar N, Yadav AK, Schwessinger B, Rathjen J, Cazzonelli CI, Wilson PB, Gilliham M, Chen ZH, Pogson BJ
(2017)
A chloroplast retrograde signal, 3'-phosphoadenosine 5'-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination.
eLIFE
6:.
|
|
|
2017
|
Ahrens CW, Supple MA, Aitken NC, Cantrill DJ, Borevitz JO, James EA
(2017)
Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain.
Annals of Botany
119(8):1267-1277.
|
|
|
2017
|
Tcherkez G, Gauthier P, Buckley TN, Busch FA, Barbour MM, Bruhn D, Heskel MA, Gong XY, Crous K, Griffin KL, Way DA, Turnbull MH, Adams MA, Atkin OK, Bender M, Farquhar GD, Cornic G
(2017)
Tracking the origins of the Kok effect, 70 years after its discovery.
The New phytologist
214(2):506-510.
|
|
|
2017
|
Fyllas NM, Bentley LP, Shenkin A, Asner GP, Atkin OK, Díaz S, Enquist BJ, Farfan-Rios W, Gloor E, Guerrieri R, Huasco WH, Ishida Y, Martin RE, Meir P, Phillips O, Salinas N, Silman M, Weerasinghe LK, Zaragoza-Castells J, Malhi Y
(2017)
Solar radiation and functional traits explain the decline of forest primary productivity along a tropical elevation gradient.
Ecology Letters
20(6):730-740.
|
|
|
2017
|
Bose J, Munns R, Shabala S, Gilliham M, Pogson B, Tyerman SD
(2017)
Chloroplast function and ion regulation in plants growing on saline soils: lessons from halophytes.
Journal of Experimental Botany
68(12):3129-3143.
|
|
|
2017
|
Secco D, Whelan J, Rouached H, Lister R
(2017)
Nutrient stress-induced chromatin changes in plants.
Current Opinion in Plant Biology
39:1-7.
|
|
|
2017
|
Lee K, Han JH, Park YI, Colas des Francs-Small C, Small I, Kang H
(2017)
The mitochondrial pentatricopeptide repeat protein PPR19 is involved in the stabilization of NADH dehydrogenase 1 transcripts and is crucial for mitochondrial function and Arabidopsis thaliana development.
The New phytologist
215(1):202-216.
|
|
|
2017
|
Linn J, Ren M, Berkowitz O, Ding W, Van Der Merwe MJ, Whelan J, Jost R
(2017)
Root cell-specific regulators of phosphate-dependent growth.
Plant Physiology
174(3):1969-1989.
|
|
|
2017
|
Li S, Ying Y, Secco D, Wang C, Narsai R, Whelan J, Shou H
(2017)
Molecular interaction between PHO2 and GIGANTEA reveals a new crosstalk between flowering time and phosphate homeostasis in Oryza sativa.
Plant, cell & environment
40(8):1487-1499.
|
|
|
2017
|
Jayasena AS, Fisher MF, Panero JL, Secco D, Bernath-Levin K, Berkowitz O, Taylor NL, Schilling EE, Whelan J, Mylne JS
(2017)
Stepwise Evolution of a Buried Inhibitor Peptide over 45 My.
Molecular Biology and Evolution
34(6):1505-1516.
|
|
|
2017
|
James AM, Jayasena AS, Zhang J, Berkowitz O, Secco D, Knott GJ, Whelan J, Bond CS, Mylne JS
(2017)
Evidence for Ancient Origins of Bowman-Birk Inhibitors from <i>Selaginella moellendorffii</i>.
The Plant Cell
29(3):461-473.
|
|
|
2017
|
Sasidharan R, Bailey-Serres J, Ashikari M, Atwell BJ, Colmer TD, Fagerstedt K, Fukao T, Geigenberger P, Hebelstrup KH, Hill RD, Holdsworth MJ, Ismail AM, Licausi F, Mustroph A, Nakazono M, Pedersen O, Perata P, Sauter M, Shih MC, Sorrell BK, Striker GG, van Dongen JT, Whelan J, Xiao S, Visser EJ, Voesenek LA
(2017)
Community recommendations on terminology and procedures used in flooding and low oxygen stress research.
The New phytologist
214(4):1403-1407.
|
|
|
2017
|
Crous KY, Wallin G, Atkin OK, Uddling J, Af Ekenstam A
(2017)
Acclimation of light and dark respiration to experimental and seasonal warming are mediated by changes in leaf nitrogen in Eucalyptus globulus.
Tree Physiology
37(8):1069-1083.
|
|
|
2017
|
Crous KY, O'Sullivan OS, Zaragoza-Castells J, Bloomfield KJ, Negrini ACA, Meir P, Turnbull MH, Griffin KL, Atkin OK
(2017)
Nitrogen and phosphorus availabilities interact to modulate leaf trait scaling relationships across six plant functional types in a controlled-environment study.
The New phytologist
215(3):992-1008.
|
|
|
2017
|
Scafaro AP, Xiang S, Long BM, Bahar NHA, Weerasinghe LK, Creek D, Evans JR, Reich PB, Atkin OK
(2017)
Strong thermal acclimation of photosynthesis in tropical and temperate wet-forest tree species: the importance of altered Rubisco content.
Global change biology
23(7):2783-2800.
|
|
|
2017
|
Sseruwagi P, Wainaina J, Ndunguru J, Tumuhimbise R, Tairo F, Guo JY, Vrielink A, Blythe A, Kinene T, De Marchi B, Kehoe MA, Tanz S, Boykin LM
(2017)
The first transcriptomes from field-collected individual whiteflies ( <i>Bemisia tabaci</i>, Hemiptera: Aleyrodidae): a case study of the endosymbiont composition.
Gates Open Research
1:16.
|
|
|
2017
|
Van Aken O, Pogson BJ
(2017)
Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
Cell Death & Differentiation
24(6):955-960.
|
|
|
2017
|
Manani DM, Ateka EM, Nyanjom SR, Boykin LM
(2017)
Phylogenetic Relationships among Whiteflies in the Bemisia tabaci (Gennadius) Species Complex from Major Cassava Growing Areas in Kenya.
Insects
8(1).
|
|
|
2017
|
Waters MT, Gutjahr C, Bennett T, Nelson DC
(2017)
Strigolactone Signaling and Evolution.
Annual Review of Plant Biology
68:291-322.
|
|
|
2017
|
Waters MT, Flematti GR, Smith SM
(2017)
Assaying Germination and Seedling Responses of Arabidopsis to Karrikins.
Methods in Molecular Biology
1497:29-36.
|
|
|
2017
|
Xu B, Cheval C, Laohavisit A, Hocking B, Chiasson D, Olsson TSG, Shirasu K, Faulkner C, Gilliham M
(2017)
A calmodulin-like protein regulates plasmodesmal closure during bacterial immune responses.
The New phytologist
215(1):77-84.
|
|
|
2017
|
Betts NS, Berkowitz O, Liu R, Collins HM, Skadhauge B, Dockter C, Burton RA, Whelan J, Fincher GB
(2017)
Isolation of Tissues and Preservation of RNA from Intact, Germinated Barley Grain.
The Plant Journal
91(4):754-765.
|
|
|
2017
|
O'Leary BM, Lee CP, Atkin OK, Cheng R, Brown TB, Millar AH
(2017)
Variation in Leaf Respiration Rates at Night Correlates with Carbohydrate and Amino Acid Supply.
Plant Physiology
174(4):2261-2273.
|
|
|
2017
|
Valensisi C, Andrus C, Buckberry S, Doni Jayavelu N, Lund RJ, Lister R, Hawkins RD
(2017)
Epigenomic Landscapes of hESC-Derived Neural Rosettes: Modeling Neural Tube Formation and Diseases.
Cell Reports
20(6):1448-1462.
|
|
|
2017
|
Crisp PA, Ganguly DR, Smith AB, Murray KD, Estavillo GM, Searle I, Ford E, Bogdanović O, Lister R, Borevitz JO, Eichten SR, Pogson BJ
(2017)
Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis.
The Plant Cell
29(8):1836-1863.
|
|
|
2017
|
Bogdanović O, Lister R
(2017)
DNA methylation and the preservation of cell identity.
Current Opinion in Genetics & Development
46:9-14.
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|
|
2017
|
Kretzmann JA, Ho D, Evans CW, Plani-Lam JHC, Garcia-Bloj B, Mohamed AE, O'Mara ML, Ford E, Tan DEK, Lister R, Blancafort P, Norret M, Iyer KS
(2017)
Synthetically controlling dendrimer flexibility improves delivery of large plasmid DNA.
Chemical Science
8(4):2923-2930.
|
|
|
2017
|
Prunier R, Akman M, Kremer CT, Aitken N, Chuah A, Borevitz J, Holsinger KE
(2017)
Isolation by distance and isolation by environment contribute to population differentiation in Protea repens (Proteaceae L.), a widespread South African species.
American Journal of Botany
104(5):674-684.
|
|
|
2017
|
Hafiz Che-Othman M, Harvey Millar A, Taylor NL
(2017)
Connecting Salt Stress Signalling Pathways with Salinity Induced Changes in Mitochondrial Metabolic Processes in C3 Plants.
Plant, Cell & Environment
40(12):2875-2905.
|
|
|
2017
|
Tan HS, Jacoby RP, Ong-Abdullah M, Taylor NL, Liddell S, Chee WW, Chin CF
(2017)
Proteomic profiling of mature leaves from oil palm (Elaeis guineensis Jacq.).
ELECTROPHORESIS
38(8):1147-1153.
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|
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2017
|
Hocking B, Conn SJ, Manohar M, Xu B, Athman A, Stancombe MA, Webb AR, Hirschi KD, Gilliham M
(2017)
Heterodimerization of Arabidopsis calcium/proton exchangers contributes to regulation of guard cell dynamics and plant defense responses.
Journal of Experimental Botany
68(15):4171-4183.
|
|
|
2017
|
Selinski J, Hartmann A, Kordes A, Deckers-Hebestreit G, Whelan J, Scheibe R
(2017)
Analysis of Posttranslational Activation of Alternative Oxidase Isoforms.
Plant Physiology
174(4):2113-2127.
|
|
|
2017
|
Reynolds KB, Taylor MC, Cullerne DP, Blanchard CL, Wood CC, Singh SP, Petrie JR
(2017)
A reconfigured Kennedy pathway which promotes efficient accumulation of medium-chain fatty acids in leaf oils.
Plant Biotechnology Journal
15(11):1397-1408.
|
|
|
2017
|
Wege S, Gilliham M, Henderson SW
(2017)
Chloride: not simply a ‘cheap osmoticum’, but a beneficial plant macronutrient
Journal of Experimental Botany
68(12):3057-3069.
|
|
|
2017
|
Hendrickson PG, Doráis JA, Grow EJ, Whiddon JL, Lim JW, Wike CL, Weaver BD, Pflueger C, Emery BR, Wilcox AL, Nix DA, Peterson CM, Tapscott SJ, Carrell DT, Cairns BR
(2017)
Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons.
Nature Genetics
49(6):925-934.
|
|
|
2017
|
Prodhan MA, Jost R, Watanabe M, Hoefgen R, Lambers H, Finnegan PM
(2017)
Tight control of sulfur assimilation: an adaptive mechanism for a plant from a severely phosphorus-impoverished habitat.
The New phytologist
215(3):1068-1079.
|
|
|
2017
|
Hooper CM, Stevens TJ, Saukkonen A, Castleden IR, Singh P, Mann GW, Fabre B, Ito J, Deery MJ, Lilley KS, Petzold CJ, Millar AH, Heazlewood JL, Parsons HT
(2017)
Multiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.
The Plant Journal
92(6):1202-1217.
|
|
|
2017
|
Ganguly D, Crisp PA, Eichten SR, Pogson BJ
(2017)
The Arabidopsis DNA methylome is stable under transgenerational drought stress.
Plant Physiology
175(4):1893-1912.
|
|
|
2017
|
Tcherkez G, Gauthier P, Buckley TN, Busch FA, Barbour MM, Bruhn D, Heskel MA, Gong XY, Crous KY, Griffin K, Way D, Turnbull M, Adams MA, Atkin OK, Farquhar GD, Cornic G
(2017)
Leaf day respiration: low CO2 flux but high significance for metabolism and carbon balance.
The New phytologist
216(4):986-1001.
|
|
|
2017
|
Rogiers SY, Coetzee ZA, Walker RR, Deloire A, Tyerman SD
(2017)
Potassium in the Grape (Vitis vinifera L.) Berry: Transport and Function.
Frontiers in Plant Science
8:1629.
|
|
|
2017
|
Narsai R, Gouil Q, Secco D, Srivastava A, Karpievitch YV, Liew LC, Lister R, Lewsey MG, Whelan J
(2017)
Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination.
Genome Biology
18(1):172.
|
|
|
2017
|
Gutmann B, Royan S, Small I
(2017)
Protein Complexes Implicated in RNA Editing in Plant Organelles.
Molecular Plant
10(10):1255-1257.
|
|
|
2017
|
Murray KD, Webers C, Ong CS, Borevitz J, Warthmann N
(2017)
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity.
PLoS Computational Biology
13(9):e1005727.
|
|
|
2017
|
Liu X, Nefzger CM, Rossello FJ, Chen J, Knaupp AS, Firas J, Ford E, Pflueger J, Paynter JM, Chy HS, O'Brien CM, Huang C, Mishra K, Hodgson-Garms M, Jansz N, Williams SM, Blewitt ME, Nilsson SK, Schittenhelm RB, Laslett AL, Lister R, Polo JM
(2017)
Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming.
Nature Methods
14(11):1055-1062.
|
|
|
2017
|
Elurbe DM, Paranjpe SS, Georgiou G, van Kruijsbergen I, Bogdanovic O, Gibeaux R, Heald R, Lister R, Huynen MA, van Heeringen SJ, Veenstra GJC
(2017)
Regulatory remodeling in the allo-tetraploid frog Xenopus laevis.
Genome Biology
18(1):198.
|
|
|
2017
|
Xie H, Konate M, Sai N, Tesfamicael KG, Cavagnaro T, Gilliham M, Breen J, Metcalfe A, Stephen JR, De Bei R, Collins C, Lopez CMR
(2017)
Global DNA Methylation Patterns Can Play a Role in Defining Terroir in Grapevine (Vitis vinifera cv. Shiraz).
Frontiers in Plant Science
8:1860.
|
|
|
2017
|
Huntingford C, Atkin OK, Martinez-de la Torre A, Mercado LM, Heskel MA, Harper AB, Bloomfield KJ, O'Sullivan OS, Reich PB, Wythers KR, Butler EE, Chen M, Griffin KL, Meir P, Tjoelker MG, Turnbull MH, Sitch S, Wiltshire A, Malhi Y
(2017)
Implications of improved representations of plant respiration in a changing climate.
Nature Communications
8(1):1602.
|
|
|
2017
|
Cserne Szappanos H, Muralidharan P, Ingley E, Petereit J, Millar AH, Hool LC
(2017)
Identification of a novel cAMP dependent protein kinase A phosphorylation site on the human cardiac calcium channel.
Scientific Reports
7(1):15118.
|
|
|
2017
|
Shelden MC, Vandeleur R, Kaiser BN, Tyerman SD
(2017)
A Comparison of Petiole Hydraulics and Aquaporin Expression in an Anisohydric and Isohydric Cultivar of Grapevine in Response to Water-Stress Induced Cavitation.
Frontiers in Plant Science
8:1893.
|
|
|
2017
|
Kourghi M, Nourmohammadi S, Pei JV, Qiu J, McGaughey S, Tyerman SD, Byrt CS, Yool AJ
(2017)
Divalent Cations Regulate the Ion Conductance Properties of Diverse Classes of Aquaporins.
International Journal of Molecular Sciences
18(11). pii: E2323.
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2017
|
Coupel-Ledru A, Tyerman SD, Masclef D, Lebon E, Christophe A, Edwards EJ, Simonneau T
(2017)
Abscisic Acid Down-Regulates Hydraulic Conductance of Grapevine Leaves in Isohydric Genotypes Only.
Plant Physiology
175(3):1121-1134.
|
|
|
2017
|
Wen Z, Tyerman SD, Dechorgnat J, Ovchinnikova E, Dhugga KS, Kaiser BN
(2017)
Maize NPF6 Proteins Are Homologs of Arabidopsis CHL1 That Are Selective for Both Nitrate and Chloride.
The Plant Cell
29(10):2581-2596.
|
|
|
2017
|
Zhou X, Fu L, Xia Y, Zheng L, Chen C, Shen Z, Chen Y
(2017)
Arbuscular mycorrhizal fungi enhance the copper tolerance of Tagetes patula through the sorption and barrier mechanisms of intraradical hyphae.
Metallomics : integrated biometal science
9(7):936-948.
|
|
|
2017
|
Gowik U, Schulze S, Saladié M, Rolland V, Tanz SK, Westhoff P, Ludwig M
(2017)
A MEM1-like motif directs mesophyll cell-specific expression of the gene encoding the C4 carbonic anhydrase in Flaveria.
Journal of Experimental Botany
68(2):311-320.
|
|
|
2017
|
Knaupp AS, Buckberry S, Pflueger J, Lim SM, Ford E, Larcombe MR, Rossello FJ, de Mendoza A, Alaei S, Firas J, Holmes ML, Nair SS, Clark SJ, Nefzger CM, Lister R, Polo JM
(2017)
Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming.
Cell Stem Cell
21(6):834-845.e6.
|
|
|
2017
|
Nefzger CM, Rossello FJ, Chen J, Liu X, Knaupp AS, Firas J, Paynter JM, Pflueger J, Buckberry S, Lim SM, Williams B, Alaei S, Faye-Chauhan K, Petretto E, Nilsson SK, Lister R, Ramialison M, Powell DR, Rackham OJL, Polo JM
(2017)
Cell Type of Origin Dictates the Route to Pluripotency.
Cell Reports
21(10):2649-2660.
|
|
|
2017
|
Butler EE, Datta A, Flores-Moreno H, Chen M, Wythers KR, Fazayeli F, Banerjee A, Atkin OK, Kattge J, Amiaud B, Blonder B, Boenisch G, Bond-Lamberty B, Brown KA, Byun C, Campetella G, Cerabolini BEL, Cornelissen JHC, Craine JM, Craven D, de Vries FT, Díaz S, Domingues TF, Forey E, González-Melo A, Gross N, Han W, Hattingh WN, Hickler T, Jansen S, Kramer K, Kraft NJB, Kurokawa H, Laughlin DC, Meir P, Minden V, Niinemets Ü, Onoda Y, Peñuelas J, Read Q, Sack L, Schamp B, Soudzilovskaia NA, Spasojevic MJ, Sosinski E, Thornton PE, Valladares F, van Bodegom PM, Williams M, Wirth C, Reich PB
(2017)
Mapping local and global variability in plant trait distributions.
Proceedings of the National Academy of Sciences of the United States of America
114(51):E10937-E10946.
|
|
|
2017
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Ateka E, Alicai T, Ndunguru J, Tairo F, Sseruwagi P, Kiarie S, Makori T, Kehoe MA, Boykin LM
(2017)
Unusual occurrence of a DAG motif in the Ipomovirus Cassava brown streak virus and implications for its vector transmission.
PLoS ONE
12(11):e0187883.
|
|
|
2017
|
Rowland L, Zaragoza-Castells J, Bloomfield KJ, Turnbull MH, Bonal D, Burban B, Salinas N, Cosio E, Metcalfe DJ, Ford A, Phillips OL, Atkin OK, Meir P
(2017)
Scaling leaf respiration with nitrogen and phosphorus in tropical forests across two continents.
The New phytologist
214(3):1064-1077.
|
|
|
2017
|
Grassl J, Peng Y, Baer-Imhoof B, Welch M, Millar AH, Baer B
(2017)
Infections with the sexually transmitted pathogen <i>Nosema apis</i> trigger an immune response in the seminal fluid of honey bees (<i>Apis mellifera</i>).
J. Proteome Research
16(1):319-334.
|
|
|
2017
|
Bahar NH, Ishida FY, Weerasinghe LK, Guerrieri R, O'Sullivan OS, Bloomfield KJ, Asner GP, Martin RE, Lloyd J, Malhi Y, Phillips OL, Meir P, Salinas N, Cosio EG, Domingues TF, Quesada CA, Sinca F, Escudero Vega A, Zuloaga Ccorimanya PP, Del Aguila-Pasquel J, Quispe Huaypar K, Cuba Torres I, Butrón Loayza R, Pelaez Tapia Y, Huaman Ovalle J, Long BM, Evans JR, Atkin OK
(2017)
Leaf-level photosynthetic capacity in lowland Amazonian and high-elevation Andean tropical moist forests of Peru.
The New phytologist
214(3):1002-1018.
|
|
|
2017
|
Kantarski T, Larson S, Zhang X, DeHaan L, Borevitz J, Anderson J, Poland J
(2017)
Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing.
Theoretical and Applied Genetics
130(1):137-150.
|
|
|
2017
|
Duncan O, Trösch J, Fenske R, Taylor NL, Millar AH
(2017)
Mapping the Triticum aestivum proteome.
The Plant Journal
89(3):601-616.
|
|
|
2017
|
Li L, Nelson C, Fenske R, Trösch J, Pružinská A, Millar AH, Huang S
(2017)
Changes in specific protein degradation rates in Arabidopsis thaliana reveal multiple roles of Lon1 in mitochondrial protein homeostasis.
The Plant Journal
89(3):458-471.
|
|
|
2017
|
Rodríguez-Calcerrada J, Li M, López R, Cano FJ, Oleksyn J, Atkin OK, Pita P, Aranda I, Gil L
(2017)
Drought-induced shoot dieback starts with massive root xylem embolism and variable depletion of nonstructural carbohydrates in seedlings of two tree species.
The New phytologist
213(2):597-610.
|
|
|
2017
|
O'sullivan OS, Heskel MA, Reich PB, Tjoelker MG, Weerasinghe LK, Penillard A, Zhu L, Egerton JJ, Bloomfield KJ, Creek D, Bahar NH, Griffin KL, Hurry V, Meir P, Turnbull MH, Atkin OK
(2017)
Thermal limits of leaf metabolism across biomes.
Global change biology
23(1):209-223.
|
|
|
2017
|
Byrt CS, Zhao M, Kourghi M, Bose J, Henderson SW, Qiu J, Gilliham M, Schultz C, Schwarz M, Ramesh SA, Yool A, Tyerman S
(2017)
Non-selective cation channel activity of aquaporin AtPIP2;1 regulated by Ca(2+) and pH.
Plant, Cell & Environment
40(6):802-815.
|
|
|
2017
|
Zhao M, Tan HT, Scharwies J, Levin K, Evans JR, Tyerman SD
(2017)
Association between water and carbon dioxide transport in leaf plasma membranes: assessing the role of aquaporins.
Plant, Cell & Environment
40(6):789-801.
|
|
|
2017
|
Elliott AG, Franke B, Armstrong DA, Craik DJ, Mylne JS, Rosengren KJ
(2017)
Natural structural diversity within a conserved cyclic peptide scaffold.
Amino Acids
49(1):103-116.
|
|
|
2017
|
Alexova R, Nelson CJ, Millar AH
(2017)
Temporal development of the barley leaf metabolic response to P<sub>i</sub> limitation.
Plant, cell & environment
40(5):645-657.
|
|
|
2017
|
Gilliham M, Able JA, Roy SJ
(2017)
Translating knowledge in abiotic stress tolerance to breeding programs.
The Plant Journal
90(5):898-917.
|
|
|
2017
|
Jaime-Pérez N, Pineda B, García-Sogo B, Atares A, Athman A, Byrt CS, Olías R, Asins MJ, Gilliham M, Moreno V, Belver A
(2017)
The sodium transporter encoded by the HKT1;2 gene modulates sodium/potassium homeostasis in tomato shoots under salinity.
Plant, Cell & Environment
40(5):658-671.
|
|
|
2017
|
Narsai R, Secco D, Schultz MD, Ecker JR, Lister R, Whelan J
(2017)
Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation.
The Plant Journal
89(4):805-824.
|
|
|
2017
|
Aryamanesh N, Ruwe H, Sanglard LV, Eshraghi L, Bussell JD, Howell KA, Small I, Des Francs-Small CC
(2017)
The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript.
Plant Physiology
173(2):1164-1176.
|
|
|
2017
|
Cognat V, Morelle G, Megel C, Lalande S, Molinier J, Vincent T, Small I, Duchêne AM, Maréchal-Drouard L
(2017)
The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic.
Nucleic Acids Research
45(6):3460-3472.
|
|
|
2017
|
Ramesh SA, Tyerman SD, Gilliham M, Xu B
(2017)
γ-Aminobutyric acid (GABA) signalling in plants.
Cellular and Molecular Life Sciences
74(9):1577-1603.
|
|
|
2017
|
Scharwies JD, Tyerman SD
(2017)
Comparison of isohydric and anisohydric Vitis vinifera L. cultivars reveals a fine balance between hydraulic resistances, driving forces and transpiration in ripening berries
Functional Plant Biology
44(3):324-338.
|
|
|
2017
|
Malhi Y, Girardin CA, Goldsmith GR, Doughty CE, Salinas N, Metcalfe DB, Huaraca Huasco W, Silva-Espejo JE, Del Aguilla-Pasquell J, Farfán Amézquita F, Aragão LE, Guerrieri R, Ishida FY, Bahar NH, Farfan-Rios W, Phillips OL, Meir P, Silman M
(2017)
The variation of productivity and its allocation along a tropical elevation gradient: a whole carbon budget perspective.
The New phytologist
214(3):1019-1032.
|
|
|
2016
|
Peng Y, Grassl J, Millar AH, Baer B
(2016)
Seminal fluid of honeybees contains multiple mechanisms to combat infections of the sexually transmitted pathogen Nosema apis.
Proceedings Of The Royal Society B
283(1823).
|
|
|
2016
|
Jayasena AS, Franke B, Rosengren J, Mylne JS
(2016)
A tripartite approach identifies the major sunflower seed albumins
Theoretical and Applied Genetics
129(3):613-29.
|
|
|
2016
|
Hsieh YS, Zhang Q, Yap K, Shirley NJ, Lahnstein J, Nelson CJ, Burton RA, Millar AH, Bulone V, Fincher GB
(2016)
Genetics, Transcriptional Profiles, and Catalytic Properties of the UDP-Arabinose Mutase Family from Barley.
Biochemistry
55(2):322-34.
|
|
|
2016
|
Ströher E, Grassl J, Carrie C, Fenske R, Whelan J, Millar AH
(2016)
Glutaredoxin S15 Is Involved in Fe-S Cluster Transfer in Mitochondria Influencing Lipoic Acid-Dependent Enzymes, Plant Growth, and Arsenic Tolerance in Arabidopsis.
Plant Physiology
170(3):1284-99.
|
|
|
2016
|
Cheng S, Gutmann B, Zhong X, Ye Y, Fisher MF, Bai F, Castleden I, Song Y, Song B, Huang J, Liu X, Xu X, Lim BL, Bond CS, Yiu SM, Small I
(2016)
Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.
The Plant Journal
85(4):532-47.
|
|
|
2016
|
Baby T, Collins C, Tyerman SD, Gilliham M
(2016)
Salinity Negatively Affects Pollen Tube Growth and Fruit Set in Grapevines and Cannot Be Ameliorated by Silicon
American Journal of Enology and Viticulture
67:218-228.
|
|
|
2016
|
Nagarajan Y, Rongala J, Luang S, Singh A, Shadiac N, Hayes J, Sutton T, Gilliham M, Tyerman S, McPhee G, Voelcker NH, Mertens HD, Kirby N, Lee JG, Yingling YG, Hrmova M
(2016)
Na+-Dependent Anion Transport by a Barley Efflux Protein Revealed through an Integrative Platform.
The Plant Cell
28(1):202-18.
|
|
|
2016
|
Wege S, Khan GA, Jung JY, Vogiatzaki E, Pradervand S, Aller I, Meyer AJ, Poirier Y
(2016)
The EXS Domain of PHO1 Participates in the Response of Shoots to Phosphate Deficiency via a Root-to-Shoot Signal.
Plant Physiology
170(1):385-400.
|
|
|
2016
|
Williams AV, Miller JT, Small I, Nevill PG, Boykin LM
(2016)
Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia.
Molecular Phylogenetics and Evolution
96:1-8.
|
|
|
2016
|
Harper AB, Cox PM, Friedlingstein P, Wiltshire AJ, Jones CD, Sitch S, Mercado LM, Groenendijk M, Robertson E, Kattge J, Bönisch G, Atkin OK, Bahn M, Cornelissen J, Niinemets Ü, Onipchenko V, Peñuelas J, Poorter L, Reich, PB, Soudzilovskaia NA Bodegom PV
(2016)
Improved representation of plant functional types and physiology in the Joint UK Land Environment Simulator (JULES v4.2) using plant trait information.
Geoscientific Model Development
9:2415-2440.
|
|
|
2016
|
Carmody M, Waszczak C, Idänheimo N, Saarinen T, Kangasjärvi J
(2016)
ROS signalling in a destablised world: A molecule understanding of climate change
J. Plant Physiol
203:69-83.
|
|
|
2016
|
Roy SJ, Collins NC, Munns R
(2016)
Abiotic stress genes and mechanisms in wheat
Encyclopedia of Food Grains, 2nd Edition
4:393-397.
|
|
|
2016
|
Wang Y, Lyu W, Berkowitz O, Radomiljac JD, Law SR, Murcha MW, Carrie C, Teixeira PF, Kmiec B, Duncan O, Van Aken O, Narsai R, Glaser E, Huang S, Roessner U, Millar AH, Whelan J
(2016)
Inactivation of Mitochondrial Complex I Induces the Expression of a Twin Cysteine Protein that Targets and Affects Cytosolic, Chloroplastidic and Mitochondrial Function.
Molecular Plant
9(5):696-710.
|
|
|
2016
|
Selinski J, Hartmann A, Höfler S, Deckers-Hebestreit G, Scheibe R
(2016)
Refined method to study the posttranslational regulation of alternative oxidases from Arabidopsis thaliana in vitro
Physiologia Plantarum
157(3):264-79.
|
|
|
2016
|
Shelden MC, Dias DA, Jayasinghe NS, Bacic A, Roessner U
(2016)
Root spatial metabolite profiling of two genotypes of barley (Hordeum vulgare L.) reveals differences in response to short-term salt stress
Journal of Experimental Botany
67(12):3731-45.
|
|
|
2016
|
Setter TL, Waters I, Stefanova K, Munns R, Barrett-Lennard EG
(2016)
Salt tolerance, date of flowering and rain affect the productivity of wheat and barley on rainfed saline land.
Field Crops Research
194:31-42.
|
|
|
2016
|
Dosselli R, Grassl J, Carson A, Simmons LW, Baer B
(2016)
Flight behaviour of honey bee (Apis mellifera) workers is altered by initial infections of the fungal parasite Nosema apis
Scientific Reports
6:36649.
|
|
|
2016
|
Flematti GR, Scaffidi A, Waters MT, Smith SM
(2016)
Stereospecificity in strigolactone biosynthesis and perception.
Planta
243(6):1361-73.
|
|
|
2016
|
Zhu M, Shabala L, Cuin TA, Huang X, Zhou M, Munns R, Shabala S
(2016)
Nax loci affect SOS1-like Na+/H+ exchanger expression and activity in wheat.
Journal of Experimental Botany
67(3):835-44.
|
|
|
2016
|
Nicotra AB, Chong C, Bragg JG, Ong CR, Aitken NC, Chuah A, Lepschi B, Borevitz JO
(2016)
Population and phylogenomic decomposition via genotyping-by-sequencing in Australian Pelargonium.
Molecular Ecology
25(9):2000-14.
|
|
|
2016
|
Chan KX, Phua SY, Crisp P, McQuinn R, Pogson BJ
(2016)
Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond.
Annual Review of Plant Biology
29;67:25-53.
|
|
|
2016
|
Bowerman AF, Newberry M, Dielen AS, Whan A, Larroque O, Pritchard J, Gubler F, Howitt CA, Pogson BJ, Morell MK, Ral JP
(2016)
Suppression of glucan, water dikinase in the endosperm alters wheat grain properties, germination and coleoptile growth.
Plant Biotechnology Journal
14(1):398-408.
|
|
|
2016
|
Jacoby RP, Che-Othman MH, Millar AH, Taylor NL
(2016)
Analysis of the sodium chloride-dependent respiratory kinetics of wheat mitochondria reveals differential effects on phosphorylating and non-phosphorylating electron transport pathways.
Plant, cell & environment
39(4):823-33.
|
|
|
2016
|
Baer B, Millar AH
(2016)
Proteomics in evolutionary ecology.
Journal of Proteomics
135:4-11.
|
|
|
2016
|
Hooper CM, Castleden IR, Aryamanesh N, Jacoby RP, Millar AH
(2016)
Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL).
Plant and Cell Physiology
57(1):e9.
|
|
|
2016
|
Gilliham M, Tyerman SD
(2016)
Linking Metabolism to Membrane Signaling: The GABA-Malate Connection.
Trends in Plant Science
21(4):295-301.
|
|
|
2016
|
Haïli N, Planchard N, Arnal N, Quadrado M, Vrielynck N, Dahan J, Francs-Small CC, Mireau H
(2016)
The MTL1 Pentatricopeptide Repeat Protein Is Required for Both Translation and Splicing of the Mitochondrial NADH DEHYDROGENASE SUBUNIT7 mRNA in Arabidopsis.
Plant Physiology
170(1):354-66.
|
|
|
2016
|
Evans-Roberts KM, Mitchenall LA, Wall MK, Leroux J, Mylne JS, Maxwell A
(2016)
DNA Gyrase Is the Target for the Quinolone Drug Ciprofloxacin in Arabidopsis thaliana.
The Journal of Biological Chemistry
291(7):3136-44.
|
|
|
2016
|
De Kauwe MG, Lin YS, Wright IJ, Medlyn BE, Crous KY, Ellsworth DS, Maire V, Prentice IC, Atkin OK, Rogers A, Niinemets Ü, Serbin SP, Meir P, Uddling J, Togashi HF, Tarvainen L, Weerasinghe LK, Evans BJ, Ishida FY, Domingues TF
(2016)
A test of the 'one-point method' for estimating maximum carboxylation capacity from field-measured, light-saturated photosynthesis.
The New phytologist
210(3):1130-44.
|
|
|
2016
|
Bruggeman Q, Mazubert C, Prunier F, Lugan R, Chan KX, Phua SY, Pogson BJ, Krieger-Liszkay A, Delarue M, Benhamed M, Bergounioux C, Raynaud C
(2016)
Chloroplast Activity and 3'phosphadenosine 5'phosphate Signaling Regulate Programmed Cell Death in Arabidopsis.
Plant Physiology
170(3):1745-56.
|
|
|
2016
|
Berkowitz O, De Clercq I, Van Breusegem F, Whelan J
(2016)
Interaction between hormonal and mitochondrial signalling during growth, development and in plant defence responses.
Plant, Cell & Environment
39(5):1127-39.
|
|
|
2016
|
Shabala S, Wu H, Bose J
(2016)
Salt stress sensing and early signalling events in plant roots: Current knowledge and hypothesis.
Plant Science
241:109-19.
|
|
|
2016
|
Wilson R, Golub SB, Rowley L, Angelucci C, Karpievitch YV, Bateman JF, Fosang AJ
(2016)
Novel Elements of the Chondrocyte Stress Response Identified Using an in Vitro Model of Mouse Cartilage Degradation.
J. Proteome Research
15(3):1033-50.
|
|
|
2016
|
Wu W, Liu S, Ruwe H, Zhang D, Melonek J, Zhu Y, Hu X, Gusewski S, Yin P, Small ID, Howell KA, Huang J
(2016)
SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana.
The Plant Journal
85(5):607-21.
|
|
|
2016
|
Taylor CM, Jost R, Erskine W, Nelson MN
(2016)
Identifying Stable Reference Genes for qRT-PCR Normalisation in Gene Expression Studies of Narrow-Leafed Lupin (Lupinus angustifolius L.).
PLoS ONE
11(2):e0148300.
|
|
|
2016
|
de Mendoza A, Jones JW, Friedrich M
(2016)
Methuselah/Methuselah-like G protein-coupled receptors constitute an ancient metazoan gene family.
Scientific Reports
6:21801.
|
|
|
2016
|
Jacoby RP, Millar AH, Taylor NL
(2016)
Opportunities for wheat proteomics to discover the biomarkers for respiration-dependent biomass production, stress tolerance and cytoplasmic male sterility.
Journal of Proteomics
143:36-44.
|
|
|
2016
|
Bogdanović O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, Sauka-Spengler T, Ecker JR, Vermeulen M, Gómez-Skarmeta JL, Lister R
(2016)
Active DNA demethylation at enhancers during the vertebrate phylotypic period.
Nature Genetics
48(4):417-26.
|
|
|
2016
|
Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J
(2016)
Epigenomic landscapes of retinal rods and cones.
eLIFE
5:e11613.
|
|
|
2016
|
Melonek J, Oetke S, Krupinska K
(2016)
Multifunctionality of plastid nucleoids as revealed by proteome analyses.
Biochimica et Biophysica Acta - General Subjects
1864(8):1016-38.
|
|
|
2016
|
Crisp PA, Ganguly D, Eichten SR, Borevitz JO, Pogson BJ
(2016)
Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics.
Science Advances
2(2):e1501340.
|
|
|
2016
|
Heskel MA, O'Sullivan OS, Reich PB, Tjoelker MG, Weerasinghe LK, Penillard A, Egerton JJ, Creek D, Bloomfield KJ, Xiang J, Sinca F, Stangl ZR, Martinez-de la Torre A, Griffin KL, Huntingford C, Hurry V, Meir P, Turnbull MH, Atkin OK
(2016)
Convergence in the temperature response of leaf respiration across biomes and plant functional types.
Proceedings of the National Academy of Sciences of the United States of America
113(14):3832-7.
|
|
|
2016
|
Bianco-Miotto T, Mayne B, Buckberry S, Breen J, Rodriguez Lopez C, Roberts C
(2016)
Recent progress towards understanding the role of DNA methylation in human placental development.
Reproduction
152(1):R23-30.
|
|
|
2016
|
Amarasinghe S, Watson-Haigh NS, Gilliham M, Roy S, Baumann U
(2016)
The evolutionary origin of CIPK16: A gene involved in enhanced salt tolerance.
Molecular Phylogenetics and Evolution
100:135-47.
|
|
|
2016
|
Kmiec B, Teixeira PF, Murcha MW, Glaser E
(2016)
Divergent evolution of the M3A family of metallopeptidases in plants.
Physiologia Plantarum
157(3):380-8.
|
|
|
2016
|
De Bei R, Fuentes S, Gilliham M, Tyerman S, Edwards E, Bianchini N, Smith J, Collins C
(2016)
VitiCanopy: A Free Computer App to Estimate Canopy Vigor and Porosity for Grapevine.
Sensors
16(4). pii: E585.
|
|
|
2016
|
Yin G, Whelan J, Wu S, Zhou J, Chen B, Chen X, Zhang J, He J, Xin X, Lu X
(2016)
Comprehensive Mitochondrial Metabolic Shift during the Critical Node of Seed Ageing in Rice.
PLoS ONE
11(4):e0148013.
|
|
|
2016
|
Scafaro AP, Gallé A, Van Rie J, Carmo-Silva E, Salvucci ME, Atwell BJ
(2016)
Heat tolerance in a wild Oryza species is attributed to maintenance of Rubisco activation by a thermally stable Rubisco activase ortholog.
The New phytologist
211(3):899-911.
|
|
|
2016
|
Lee CP, Millar AH
(2016)
The Plant Mitochondrial Transportome: Balancing Metabolic Demands with Energetic Constraints.
Trends in Plant Science
21(8):662-676.
|
|
|
2016
|
Franke B, Colgrave ML, Mylne JS, Rosengren KJ
(2016)
Mature forms of the major seed storage albumins in sunflower: A mass spectrometric approach.
Journal of Proteomics
147:177-86.
|
|
|
2016
|
Brewer PB, Yoneyama K, Filardo F, Meyers E, Scaffidi A, Frickey T, Akiyama K, Seto Y, Dun EA, Cremer JE, Kerr SC, Waters MT, Flematti GR, Mason MG, Weiller G, Yamaguchi S, Nomura T, Smith SM, Yoneyama K, Beveridge CA
(2016)
LATERAL BRANCHING OXIDOREDUCTASE acts in the final stages of strigolactone biosynthesis in Arabidopsis.
Proceedings of the National Academy of Sciences of the United States of America
113(22):6301-6.
|
|
|
2016
|
Hocking B, Tyerman SD, Burton RA, Gilliham M
(2016)
Fruit Calcium: Transport and Physiology.
Frontiers in Plant Science
7:569.
|
|
|
2016
|
Sew YS, Stroher E, Fenske R, Millar AH
(2016)
Loss of mitochondrial malate dehydrogenase activity alters seed metabolism impairing seed maturation and post-germination growth in Arabidopsis.
Plant Physiology
171(2):849-63.
|
|
|
2016
|
Van Aken O, De Clercq I, Ivanova A, Law SR, Van Breusegem F, Millar AH, Whelan J
(2016)
Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
Plant Physiology
171(3):2150-65.
|
|
|
2016
|
Huang S, Van Aken O, Schwarzländer M, Belt K, Millar AH
(2016)
Roles of mitochondrial reactive oxygen species in cellular signalling and stress response in plants.
Plant Physiology
171(3):1551-9.
|
|
|
2016
|
Sack L, Ball MC, Brodersen C, Davis SD, Des Marais DL, Donovan LA, Givnish TJ, Hacke UG, Huxman T, Jansen S, Jacobsen AL, Johnson D, Koch GW, Maurel C, McCulloh KA, McDowell NG, McElrone A, Meinzer FC, Melcher PJ, North G, Pellegrini M, Pockman WT, Pratt RB, Sala A, Santiago LS, Savage JA, Scoffoni C, Sevanto S, Sperry J, Tyerman SD, Way D, Holbrook NM
(2016)
Plant hydraulics as a central hub integrating plant and ecosystem function: meeting report for "Emerging Frontiers in Plant Hydraulics" (Washington, DC, May 2015).
Plant, Cell & Environment
39(9):2085-94.
|
|
|
2016
|
Hontelez S, van Kruijsbergen I, Georgiou G, van Heeringen SJ, Bogdanovic O, Lister R, Veenstra GJ
(2016)
Erratum: Embryonic transcription is controlled by maternally defined chromatin state.
Nature Communications
7:12208.
|
|
|
2016
|
Kawakatsu T, Stuart T, Valdes M, Breakfield N, Schmitz RJ, Nery JR, Urich MA, Han X, Lister R, Benfey PN, Ecker JR
(2016)
Unique cell-type-specific patterns of DNA methylation in the root meristem.
Nature Plants
2(5):16058.
|
|
|
2016
|
Hou X, Rivers J, León P, McQuinn RP, Pogson BJ
(2016)
Synthesis and Function of Apocarotenoid Signals in Plants.
Trends in Plant Science
21(9):792-803.
|
|
|
2016
|
Carmody M, Crisp PA, D'Alessandro S, Ganguly D, Gordon M, Havaux M, Albrecht-Borth V, Pogson BJ
(2016)
Uncoupling High Light Responses from Singlet Oxygen Retrograde Signaling and Spatial-Temporal Systemic Acquired Acclimation.
Plant Physiology
171(3):1734-49.
|
|
|
2016
|
Atkin O
(2016)
New Phytologist: bridging the 'plant function - climate modelling divide'.
The New phytologist
209(4):1329-32.
|
|
|
2016
|
Qiu J, Henderson SW, Tester M, Roy SJ, Gilliham M
(2016)
SLAH1, a homologue of the slow type anion channel SLAC1, modulates shoot Cl- accumulation and salt tolerance in Arabidopsis thaliana.
Journal of Experimental Botany
67(15):4495-505.
|
|
|
2016
|
Li B, Byrt C, Qiu J, Baumann U, Hrmova M, Evrard A, Johnson AA, Birnbaum KD, Mayo GM, Jha D, Henderson SW, Tester M, Gilliham M, Roy SJ
(2016)
Identification of a Stelar-Localized Transport Protein That Facilitates Root-to-Shoot Transfer of Chloride in Arabidopsis.
Plant Physiology
170(2):1014-29.
|
|
|
2016
|
Chan KX, Mabbitt PD, Phua SY, Mueller JW, Nisar N, Gigolashvili T, Stroeher E, Grassl J, Arlt W, Estavillo GM, Jackson CJ, Pogson BJ
(2016)
Sensing and signaling of oxidative stress in chloroplasts by inactivation of the SAL1 phosphoadenosine phosphatase.
Proceedings of the National Academy of Sciences of the United States of America
113(31):E4567-76.
|
|
|
2016
|
Van Aken O, Ford E, Lister R, Huang S, Millar AH
(2016)
Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
The Plant Journal
88(4):542-558.
|
|
|
2016
|
Lee CP, Maksaev G, Jensen GS, Murcha MW, Wilson ME, Fricker M, Hell R, Haswell ES, Millar AH, Sweetlove L
(2016)
MSL1 is a mechanosensitive ion channel that dissipates mitochondrial membrane potential and maintains redox homeostasis in mitochondria during abiotic stress.
The Plant Journal
88(5):809-825.
|
|
|
2016
|
Hu Z, Vanderhaeghen R, Cools T, Wang Y, De Clercq I, Leroux O, Nguyen L, Belt K, Millar AH, Audenaert D, Hilson P, Small ID, Mouille G, Vernhettes S, Van Breusegem F, Whelan J, Höfte H, De Veylder L
(2016)
Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
The Plant Cell
28(9):2276-2290.
|
|
|
2016
|
Franke B, Jayasena AS, Fisher MF, Swedberg JE, Taylor NL, Mylne JS, Rosengren KJ
(2016)
Diverse cyclic seed peptides in the Mexican zinnia (Zinnia haageana).
Biopolymers Peptide Science
106(6):806-817.
|
|
|
2016
|
O'Leary BM, Neale HC, Geilfus CM, Jackson RW, Arnold DL, Preston GM
(2016)
Early changes in apoplast composition associated with defence and disease in interactions between Phaseolus vulgaris and the halo blight pathogen Pseudomonas syringae Pv. phaseolicola.
Plant, Cell & Environment
39(10):2172-84.
|
|
|
2016
|
Eichten SR, Stuart T, Srivastava A, Lister R, Borevitz JO
(2016)
DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity.
Genome Research
26(11):1520-1531.
|
|
|
2016
|
Heskel MA, Atkin OK, O'Sullivan OS, Reich P, Tjoelker MG, Weerasinghe LK, Penillard A, Egerton JJ, Creek D, Bloomfield KJ, Xiang J, Sinca F, Stangl ZR, Martinez-de la Torre A, Griffin KL, Huntingford C, Hurry V, Meir P, Turnbull MH
(2016)
Reply to Adams et al.: Empirical versus process-based approaches to modeling temperature responses of leaf respiration.
Proceedings of the National Academy of Sciences of the United States of America
113(41):E5996-E5997.
|
|
|
2016
|
Lu L, Qiu W, Gao W, Tyerman SD, Shou H, Wang C
(2016)
OsPAP10c, a novel secreted acid phosphatase in rice, plays an important role in the utilization of external organic phosphorus.
Plant, Cell & Environment
39(10):2247-59.
|
|
|
2016
|
Rungrat T, Awlia M, Brown T, Cheng R, Sirault X, Fajkus J, Trtilek M, Furbank B, Badger M, Tester M, Pogson BJ, Borevitz JO, Wilson P
(2016)
Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery.
Arabidopsis Book
14:e0185.
|
|
|
2016
|
Melonek J, Stone JD, Small I
(2016)
Evolutionary plasticity of restorer-of-fertility-like proteins in rice.
Scientific Reports
6:35152.
|
|
|
2016
|
Liu Y, Yu L, Qu Y, Chen J, Liu X, Hong H, Liu Z, Chang R, Gilliham M, Qiu L, Guan R
(2016)
GmSALT3, Which Confers Improved Soybean Salt Tolerance in the Field, Increases Leaf Cl(-) Exclusion Prior to Na(+) Exclusion But Does Not Improve Early Vigor under Salinity.
Frontiers in Plant Science
7:1485.
|
|
|
2016
|
Li L, Kubiszewski-Jakubiak S, Radomiljac J, Wang Y, Law SR, Keech O, Narsai R, Berkowitz O, Duncan O, Murcha MW, Whelan J
(2016)
Characterization of a novel β-barrel protein (AtOM47) from the mitochondrial outer membrane of Arabidopsis thaliana.
Journal of Experimental Botany
67(21):6061-6075.
|
|
|
2016
|
Murcha MW, Kubiszewski-Jakubiak S, Teixeira PF, Gügel IL, Kmiec B, Narsai R, Ivanova A, Megel C, Schock A, Kraus S, Berkowitz O, Glaser E, Philippar K, Maréchal-Drouard L, Soll J, Whelan J
(2016)
Plant-Specific Preprotein and Amino Acid Transporter Proteins Are Required for tRNA Import into Mitochondria.
Plant Physiology
172(4):2471-2490.
|
|
|
2016
|
Chrobok D, Law SR, Brouwer B, Lindén P, Ziolkowska A, Liebsch D, Narsai R, Szal B, Moritz T, Rouhier N, Whelan J, Gardeström P, Keech O
(2016)
Dissecting the Metabolic Role of Mitochondria during Developmental Leaf Senescence.
Plant Physiology
172(4):2132-2153.
|
|
|
2016
|
Kurze C, Dosselli R, Grassl J, Le Conte Y, Kryger P, Baer B, Moritz RF
(2016)
Differential proteomics reveals novel insights into Nosema-honey bee interactions.
Insect Biochemistry and Molecular Biology
79:42-49.
|
|
|
2016
|
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, Van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, Van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, Dupasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS
(2016)
Genome evolution in the allotetraploid frog Xenopus laevis.
Nature
538(7625):336-343.
|
|
|
2016
|
Morris GP, Hu Z, Grabowski PP, Borevitz JO, de Graaff MA, Miller RM, Jastrow JD
(2016)
Genotypic diversity effects on biomass production in native perennial bioenergy cropping systems.
Global Change Biology. Bioenergy
8(5):1000-1014.
|
|
|
2016
|
Liberti J, Baer B, Boomsma JJ
(2016)
Queen reproductive tract secretions enhance sperm motility in ants.
Biology Letters
12(11).
|
|
|
2016
|
Baer B, Collins J, Maalaps K, den Boer SP
(2016)
Sperm use economy of honeybee (Apis mellifera) queens.
Ecology and Evolution
6(9):2877-85.
|
|
|
2016
|
Bogdanovic O, van Heeringen SJ
(2016)
ChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications.
Methods in Molecular Biology
1480:37-53.
|
|
|
2016
|
Kariman K, Barker SJ, Jost R, Finnegan PM, Tibbett M
(2016)
Sensitivity of jarrah (Eucalyptus marginata) to phosphate, phosphite, and arsenate pulses as influenced by fungal symbiotic associations.
Mycorrhiza
26(5):401-15.
|
|
|
2016
|
Munns R, James RA, Gilliham M, Flowers TJ, Colmer TD
(2016)
Tissue tolerance: an essential but elusive trait for salt-tolerant crops
Functional Plant Biology
43:1103-1113.
|
|
|
2016
|
Stuart T, Eichten SR, Cahn J, Karpievitch YV, Borevitz JO, Lister R
(2016)
Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation.
eLIFE
5. pii: e20777.
|
|
|
2016
|
Passman AM, Low J, London R, Tirnitz-Parker JE, Miyajima A, Tanaka M, Strick-Marchand H, Darlington GJ, Finch-Edmondson M, Ochsner S, Zhu C, Whelan J, Callus BA, Yeoh GC
(2016)
A Transcriptomic Signature of Mouse Liver Progenitor Cells.
Stem Cells International
2016:5702873.
|
|
|
2016
|
Byrt CS, Betts NS, Tan HT, Lim WL, Ermawar RA, Nguyen HY, Shirley NJ, Lahnstein J, Corbin K, Fincher GB, Knauf V, Burton RA
(2016)
Prospecting for Energy-Rich Renewable Raw Materials: Sorghum Stem Case Study
PLoS ONE
11(5):e0156638.
|
|
|
2016
|
McGaughey SA, Osborn HL, Chen L, Pegler JL, Tyerman SD, Furbank RT, Byrt CS, Grof CP
(2016)
Roles of Aquaporins in Setaria viridis Stem Development and Sugar Storage
Frontiers in Plant Science
7;1815.
|
|
|
2016
|
Corbin KR, Betts NS, van Holst N, Jiranek V, Chambers D, Byrt CS, Fincher GB, Burton RA
(2016)
Low-Input Fermentations of Agave tequilana Leaf Juice Generate High Returns on Ethanol Yields
Bioenergy Research
9:1142.
|
|
|
2016
|
Chakraborty K, Bose J, Shabala L, Shabala S
(2016)
Difference in root K+ retention ability and reduced sensitivity of K+-permeable channels to reactive oxygen species confer differential salt tolerance in three Brassica species
Journal of Experimental Botany
67.
|
|
|
2016
|
Manalil S, Coast O, Werth J, Chauhan BS
(2016)
Weed management in cotton (Gossypium hirsutum L.) through weed-crop competition: A review
Crop Protection
95:53-59.
|
|
|
2016
|
Proust H, Honkanen S, Jones VA, Morieri G, Prescott H, Kelly S, Ishizaki K, Kohchi T, Dolan L
(2016)
RSL Class I Genes Controlled the Development of Epidermal Structures in the Common Ancestor of Land Plants.
Current Biology
26(1):93-9.
|
|
|
2016
|
Coast O, Murdoch AJ, Ellis RH, Hay FR, Jagadish KS
(2016)
Resilience of rice (Oryza spp.) pollen germination and tube growth to temperature stress.
Plant, Cell & Environment
39(1):26-37.
|
|
|
2016
|
Shabala L, Zhang J, Pottosin II, Bose J, Zhu M, Fuglsang AT, Velarde-Buendia A, Massart A, Hill CB, Roessner U, Bacic A, Wu H, Azzarello E, Pandolfi C, Zhou M, Poschenrieder C, Mancuso S, Shabala S
(2016)
Cell-Type-Specific H+-ATPase Activity in Root Tissues Enables K+ Retention and Mediates Acclimation of Barley (Hordeum vulgare) to Salinity Stress
Plant Physiology
172(4):2445-2458.
|
|
|
2016
|
Shabala S, Bose J, Fuglsang AT, Pottosin I
(2016)
On a quest for stress tolerance genes: membrane transporters in sensing and adapting to hostile soils
Journal of Experimental Botany
67(4):1015-1031.
|
|
|
2016
|
Honkanen S, Jones V, Morieri G, Champion C, Hetherington AJ, Kelly S, Proust H, Saint-Marcoux D, Prescott H, Dolan L
(2016)
The Mechanism Forming the Cell Surface of Tip-Growing Rooting Cells Is Conserved among Land Plants
Current Biology
26(23):3238-3244.
|
|
|
2016
|
Percey WJ, Shabala L, Wu Q, Su N, Breadmore MC, Guijt RM, Bose J, Shabala S
(2016)
Potassium retention in leaf mesophyll as an element of salinity tissue tolerance in halophytes
Plant Physiology
109.
|
|
|
2016
|
Percey WJ, McMinn A, Bose J, Breadmore MC, Guijt RM, Shabala S
(2016)
Salinity effects on chloroplast PSII performance in glycophytes and halophytes1
Functional Plant Biology
43.
|
|
|
2016
|
Honkanen S, Dolan L
(2016)
Growth regulation in tip-growing cells that develop on the epidermis.
Current Opinion in Plant Biology
34:77-83.
|
|
|
2016
|
Caravia L, Collins C, Petrie PD, Tyerman SD
(2016)
Application of shade treatments during Shiraz berry ripening to reduce the impact of high temperature
Australian Journal of Grape and Wine Research
22(3):422-437.
|
|
|
2016
|
Degaris KA, Walker RR, Loveys BR, Tyerman SD
(2016)
Comparative effects of deficit and partial root‐zone drying irrigation techniques using moderately saline water on ion partitioning in Shiraz and Grenache grapevines
Australian Journal of Grape and Wine Research
22(2).
|
|
|
2016
|
Caravia L, Pagay V, Collins C, Tyerman SD
(2016)
Application of sprinkler cooling within the bunch zone during ripening of Cabernet Sauvignon berries to reduce the impact of high temperature
Australian Journal of Grape and Wine Research
22.
|
|
|
2016
|
Burgess A, David R, Searle IR
(2016)
Deciphering the epitranscriptome: A green perspective.
Journal of Integrative Plant Biology
58(10):822-835.
|
|
|
2016
|
Ramakrishnan S, Pokhrel S, Palani S, Pflueger C, Parnell TJ, Cairns BR, Bhaskara S, Chandrasekharan MB
(2016)
Counteracting H3K4 methylation modulators Set1 and Jhd2 co-regulate chromatin dynamics and gene transcription.
Nature Communications
7:11949.
|
|
|
2016
|
Rengel Z, Bose J, Chen Q, Tripathi B
(2016)
Magnesium alleviates plant toxicity of aluminium and heavy metals
Crop and Pasture Science
66(12):1298-1307.
|
|
|
2016
|
Sun YK, Flematti GR, Smith SM, Waters MT
(2016)
Reporter Gene-Facilitated Detection of Compounds in <i>Arabidopsis</i> Leaf Extracts that Activate the Karrikin Signaling Pathway.
Frontiers in Plant Science
7:1799.
|
|
|
2016
|
Li B, Qiu J, Jayakannan M, Xu B, Li Y, Mayo GM, Tester M, Gilliham M, Roy SJ
(2016)
<i>AtNPF2.5</i> Modulates Chloride (Cl<sup>-</sup>) Efflux from Roots of <i>Arabidopsis thaliana</i>.
Frontiers in Plant Science
7():2013.
|
|
|
2016
|
Prodhan MA, Jost R, Watanabe M, Hoefgen R, Lambers H, Finnegan PM
(2016)
Tight control of nitrate acquisition in a plant species that evolved in an extremely phosphorus-impoverished environment.
Plant, Cell & Environment
39(12):2754-2761.
|
|
|
2015
|
Albarhania AA, Collier F, Greavesa RF, Ponsonby A, Allen KJ, Vuillermin PJ, Roche P, Clarke MW
(2015)
Vitamins D and A can be successfully measured by LC-MS/MS in cord blood diluted plasma
Clinical Biochemistry
48(16-17):1105-12.
|
|
|
2015
|
Wilson AW, Wickett NJ, Grabowski P, Fant J, Borevitz J, Mueller GM
(2015)
Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Laccaria bicolor and evaluating whether a reference genome is necessary to assess homology.
Mycorrhiza
107(1):217-26.
|
|
|
2015
|
Wilson PB, Rebetzke GR, Condon AG
(2015)
Pyramiding greater early vigour and integrated transpiration efficiency in bread wheat; trade-offs and benefits
Field Crops Research
183: 102-110.
|
|
|
2015
|
Fly R, Lloyd J, Krueger S, Fernie A, van der Merwe MJ
(2015)
Improvements to Define Mitochondrial Metabolomics Using Nonaqueous Fractionation
Methods in Molecular Biology
1305:197-210.
|
|
|
2015
|
Li Q, Suzuki M, Wendt J, Patterson N, Eichten SR, Hermanson PJ, Green D, Jeddeloh J, Richmond T, Rosenbaum H, Burgess D, Springer NM, Greally JM
(2015)
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes
Plant Physiology
43(12):81.
|
|
|
2015
|
Atkinson LJ, Sherlock DJ, Atkin OK
(2015)
Source of nitrogen associated with recovery of relative growth rate in Arabidopsis thaliana acclimated to sustained cold treatment 2
Plant, Cell & Environment
38(6):1023-1034.
|
|
|
2015
|
Sanglarda L, Detmanna KC, Martinsa S, Teixeiraa RA, Pereiraa LF, Sanglarda ML, Fernieb AR, Araújoa WL, DaMattaa FM
(2015)
The role of silicon in metabolic acclimation of rice plants challenged with arsenic
Environmental and Experimental Botany
Mar (2016),123:22-36.
|
|
|
2015
|
Black LJ, Anderson D, Clarke MW, Ponsonby A-L, Lucas RM
(2015)
Analytical Bias in the Measurement of Serum 25-Hydroxyvitamin D Concentrations Impairs Assessment of Vitamin D Status in Clinical and Research Settings
PLoS ONE
10(8):e0135478.
|
|
|
2015
|
Wilson PB, Rebetzke GR, Condon AG
(2015)
Of growing importance: combining greater early vigour and transpiration efficiency for wheat in variable rainfed environments
Functional Plant Biology
42(12): 1107-1115.
|
|
|
2015
|
Baby T, Gilliham M, Tyerman SD, Collins C
(2015)
Differential fruitset between grapevine cultivars is related to differences in pollen viability and amine concentration in flowers
Australian Journal of Grape and Wine Research
22(1):149-158.
|
|
|
2015
|
Wilson PB, Streich JC, Borevitz J
(2015)
Genomic Diversity and Climate Adaptation in Brachypodium
bioRxiv
|
|
|
2015
|
Lashkari M, Hentz M, Boykin LM
(2015)
Morphometric comparisons of Diaphorina citri (Hemiptera: Liviidae) populations from Iran, USA and Pakistan
Peerj
3: e946..
|
|
|
2015
|
Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, Gonzalez I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Härpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT
(2015)
The khmer software package: enabling efficient nucleotide sequence analysis
F1000Research
2015(4):900.
|
|
|
2015
|
Li Q, Song J, West PT, Zynda G, Eichten SR, Vaughn MW, Springer NM
(2015)
Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize
Plant Physiology
168(4):1262-1274.
|
|
|
2015
|
Jost R, Pharmawati M, Lapis-Gaza HR, Rossig C, Berkowitz O, Lambers H, Finnegan PM
(2015)
Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite
Journal of Experimental Botany
66(9):2501-14.
|
|
|
2015
|
Ganguly D, Crisp P, Harter K, Pogson BJ, Albrecht-Borth V
(2015)
Genetic suppression of plant development and chloroplast biogenesis via the Snowy Cotyledon 3 and Phytochrome B pathways
Functional Plant Biology
42(7):676-686.
|
|
|
2015
|
Rivers R, Warthmann N, Pogson BJ, Borevitz J
(2015)
Genomic breeding for food, environment and livelihoods
Food Security
7(2):375-382.
|
|
|
2015
|
Long RL, Gorecki MJ, Renton M, Scott JK, Colville L, Goggin DE, Commander LE, Westcott DA, Cherry H, Finch-Savage WE
(2015)
The ecophysiology of seed persistence: a mechanistic view of the journey to germination or demise.
Biological reviews of the Cambridge Philosophical Society
90(1):31-59.
|
|
|
2015
|
Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M
(2015)
Integrative analysis of 111 reference human epigenomes.
Nature
518(7539):317-30.
|
|
|
2015
|
Kühn K, Yin G, Duncan O, Law SR, Kubiszewski-Jakubiak S, Kaur P, Meyer E, Wang Y, Small CC, Giraud E, Narsai R, Whelan J
(2015)
Decreasing electron flux through the cytochrome and/or alternative respiratory pathways triggers common and distinct cellular responses dependent on growth conditions.
Plant Physiology
167(1):228-50.
|
|
|
2015
|
Urich MA, Nery JR, Lister R, Schmitz RJ, Ecker JR
(2015)
MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing.
Nature Protocols
10(3):475-83.
|
|
|
2015
|
Murcha MW, Whelan J
(2015)
Isolation of Intact Mitochondria from the Model Plant Species Arabidopsis thaliana and Oryza sativa.
Methods in Molecular Biology
1305():1-12.
|
|
|
2015
|
Inglis TJ, Hahne DR, Merritt AJ, Clarke MW
(2015)
Volatile-sulfur-compound profile distinguishes Burkholderia pseudomallei from Burkholderia thailandensis.
Journal of Clinical Microbiology
53(3):1009-11.
|
|
|
2015
|
Wagner S, Behera S, De Bortoli S, Logan DC, Fuchs P, Carraretto L, Teardo E, Cendron L, Nietzel T, Füßl M, Doccula FG, Navazio L, Fricker MD, Van Aken O, Finkemeier I, Meyer AJ, Szabò I, Costa A, Schwarzländer M
(2015)
The EF-Hand Ca2+ Binding Protein MICU Choreographs Mitochondrial Ca2+ Dynamics in Arabidopsis.
The Plant Cell
27(11):3190-212.
|
|
|
2015
|
Gully BS, Cowieson N, Stanley WA, Shearston K, Small ID, Barkan A, Bond CS
(2015)
The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA.
Nucleic Acids Research
43(3):1918-26.
|
|
|
2015
|
Duncan O, Carrie C, Wang Y, Murcha MW
(2015)
In vitro and in vivo protein uptake studies in plant mitochondria.
Methods in Molecular Biology
1305:61-81.
|
|
|
2015
|
Megel C, Morelle G, Lalande S, Duchêne AM, Small I, Maréchal-Drouard L
(2015)
Surveillance and Cleavage of Eukaryotic tRNAs.
International Journal of Molecular Sciences
16(1):1873-1893.
|
|
|
2015
|
Taylor NL, Millar AH
(2015)
Plant mitochondrial proteomics.
Methods in Molecular Biology
1305():83-106.
|
|
|
2015
|
Kindgren P, Yap A, Bond CS, Small I
(2015)
Predictable alteration of sequence recognition by RNA editing factors from Arabidopsis.
The Plant Cell
27(2):403-16.
|
|
|
2015
|
Zhang H, Luo M, Day RC, Talbot MJ, Ivanova A, Ashton AR, Chaudhury AM, Macknight RC, Hrmova M, Koltunow AM
(2015)
Developmentally regulated HEART STOPPER, a mitochondrially targeted L18 ribosomal protein gene, is required for cell division, differentiation, and seed development in Arabidopsis.
Journal of Experimental Botany
66(19):5867-80.
|
|
|
2015
|
Zhang J, Yuan H, Fei Z, Pogson BJ, Zhang L, Li L
(2015)
Molecular characterization and transcriptome analysis of orange head Chinese cabbage (Brassica rapa L. ssp. pekinensis).
Planta
241(6):1381-94.
|
|
|
2015
|
Bogdanović O, Lister R
(2015)
Of Mice and Man: Differential DNMT Dependence in Mammalian ESCs.
Cell Stem Cell
16(5):459-60.
|
|
|
2015
|
Pogson BJ, Ganguly D, Albrecht-Borth V
(2015)
Insights into chloroplast biogenesis and development.
Biochimica et Biophysica Acta - General Subjects
1847(9):1017-24.
|
|
|
2015
|
Freeman D, Evans N, Černis E, Lister R, Dunn G
(2015)
The effect of paranoia on the judging of harmful events.
Cognitive Neuropsychology
20(2):122-7.
|
|
|
2015
|
Narsai R, Edwards JM, Roberts TH, Whelan J, Joss GH, Atwell BJ
(2015)
Mechanisms of growth and patterns of gene expression in oxygen-deprived rice coleoptiles.
The Plant Journal
82(1):25-40.
|
|
|
2015
|
Murcha MW, Narsai R, Devenish J, Kubiszewski-Jakubiak S, Whelan J
(2015)
MPIC: a mitochondrial protein import components database for plant and non-plant species.
Plant and Cell Physiology
56(1):e10.
|
|
|
2015
|
Narsai R
(2015)
Databases and informatics resources for analysis of plant mitochondria.
Methods in Molecular Biology
1305:263-79.
|
|
|
2015
|
Yin CC, Ma B, Collinge DP, Pogson BJ, He SJ, Xiong Q, Duan KX, Chen H, Yang C, Lu X, Wang YQ, Zhang WK, Chu CC, Sun XH, Fang S, Chu JF, Lu TG, Chen SY, Zhang JS
(2015)
Ethylene responses in rice roots and coleoptiles are differentially regulated by a carotenoid isomerase-mediated abscisic acid pathway.
The Plant Cell
27(4):1061-81.
|
|
|
2015
|
Huang S, Nelson CJ, Li L, Taylor NL, Ströher E, Peteriet J, Millar AH
(2015)
INTERMEDIATE CLEAVAGE PEPTIDASE55 Modifies Enzyme Amino Termini and Alters Protein Stability in Arabidopsis Mitochondria.
Plant Physiology
168(2):415-27.
|
|
|
2015
|
Ramesh SA, Tyerman SD, Xu B, Bose J, Kaur S, Conn V, Domingos P, Ullah S, Wege S, Shabala S, Feijó JA, Ryan PR, Gilliham M
(2015)
GABA signalling modulates plant growth by directly regulating the activity of plant-specific anion transporters.
Nature Communications
6():7879.
|
|
|
2015
|
Long BM, Bahar NH, Atkin OK
(2015)
Contributions of photosynthetic and non-photosynthetic cell types to leaf respiration in Vicia faba L. and their responses to growth temperature.
Plant, Cell & Environment
38(11):2263-76.
|
|
|
2015
|
Way DA, Holly C, Bruhn D, Ball MC, Atkin OK
(2015)
Diurnal and seasonal variation in light and dark respiration in field-grown Eucalyptus pauciflora.
Tree Physiology
35(8):840-9.
|
|
|
2015
|
Peng Y, Baer-Imhoof B, Millar AH, Baer B
(2015)
Consequences of Nosema apis infection for male honey bees and their fertility.
Scientific Reports
5():10565.
|
|
|
2015
|
Waters MT, Scaffidi A, Moulin SL, Sun YK, Flematti GR, Smith SM
(2015)
A Selaginella moellendorffii Ortholog of KARRIKIN INSENSITIVE2 Functions in Arabidopsis Development but Cannot Mediate Responses to Karrikins or Strigolactones.
The Plant Cell
27(7):1925-44.
|
|
|
2015
|
Williams AV, Boykin LM, Howell KA, Nevill PG, Small I
(2015)
The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene.
PLoS ONE
10(5):e0125768.
|
|
|
2015
|
Huang S, Lee CP, Millar AH
(2015)
Activity assay for plant mitochondrial enzymes.
Methods in Molecular Biology
1305:139-149.
|
|
|
2015
|
Sew YS, Millar AH, Stroeher E
(2015)
Micro-respiratory measurements in plants.
Methods in Molecular Biology
1305():187-96.
|
|
|
2015
|
Jacoby RP, Millar AH, Taylor NL
(2015)
Assessment of respiration in isolated plant mitochondria using Clark-type electrodes.
Methods in Molecular Biology
1305:165-85.
|
|
|
2015
|
Bragg JG, Supple MA, Andrew RL, Borevitz JO
(2015)
Genomic variation across landscapes: insights and applications.
The New phytologist
207(4):953-67.
|
|
|
2015
|
Vanderwel MC, Slot M, Lichstein JW, Reich PB, Kattge J, Atkin OK, Bloomfield KJ, Tjoelker MG, Kitajima K
(2015)
Global convergence in leaf respiration from estimates of thermal acclimation across time and space.
The New phytologist
207(4):1026-37.
|
|
|
2015
|
Munns R, Gilliham M
(2015)
Salinity tolerance of crops - what is the cost?
The New phytologist
208(3):668-73.
|
|
|
2015
|
Den Boer SP, Stürup M, Boomsma JJ, Baer B
(2015)
The ejaculatory biology of leafcutter ants.
Journal of Insect Physiology
74():56-62.
|
|
|
2015
|
Secco D, Wang C, Shou H, Schultz MD, Chiarenza S, Nussaume L, Ecker JR, Whelan J, Lister R
(2015)
Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.
eLIFE
4:.
|
|
|
2015
|
Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J
(2015)
Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.
Neuron
86(6):1369-84.
|
|
|
2015
|
Corbin KR, Hsieh YS, Betts NS, Byrt CS, Henderson M, Stork J, Debolt S, Fincher GB, Burton RA
(2015)
Grape marc as a source of carbohydrates for bioethanol: Chemical composition, pre-treatment and saccharification.
Bioresource Technology
193():76-83.
|
|
|
2015
|
Bernath-Levin K, Nelson C, Elliott AG, Jayasena AS, Millar AH, Craik DJ, Mylne JS
(2015)
Peptide macrocyclization by a bifunctional endoprotease.
Chemistry & Biology
22(5):571-82.
|
|
|
2015
|
Alexova R, Nelson CJ, Jacoby RP, Millar AH
(2015)
Exposure of barley plants to low Pi leads to rapid changes in root respiration that correlate with specific alterations in amino acid substrates.
The New phytologist
206(2):696-708.
|
|
|
2015
|
Liu G, Sun A, Li D, Athman A, Gilliham M, Liu L
(2015)
Molecular identification and functional analysis of a maize (Zea mays) DUR3 homolog that transports urea with high affinity.
Planta
241(4):861-74.
|
|
|
2015
|
Nisar N, Li L, Lu S, Khin NC, Pogson BJ
(2015)
Carotenoid metabolism in plants.
Molecular Plant
8(1):68-82.
|
|
|
2015
|
Flowers TJ, Munns R, Colmer TD
(2015)
Sodium chloride toxicity and the cellular basis of salt tolerance in halophytes.
Annals of Botany
115(3):419-31.
|
|
|
2015
|
Yap A, Kindgren P, Colas Des Francs-Small C, Kazama T, Tanz SK, Toriyama K, Small I
(2015)
AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5, and also promotes atpF splicing in Arabidopsis and rice.
The Plant Journal
81(5):661-9.
|
|
|
2015
|
Gully BS, Shah KR, Lee M, Shearston K, Smith NM, Sadowska A, Blythe AJ, Bernath-Levin K, Stanley WA, Small ID, Bond CS
(2015)
The design and structural characterization of a synthetic pentatricopeptide repeat protein.
Acta crystallographica. Section D, Biological crystallography
71(Pt 2):196-208.
|
|
|
2015
|
Atkin OK, Bloomfield KJ, Reich PB, Tjoelker MG, Asner GP, Bonal D, Bönisch G, Bradford MG, Cernusak LA, Cosio EG, Creek D, Crous KY, Domingues TF, Dukes JS, Egerton JJ, Evans JR, Farquhar GD, Fyllas NM, Gauthier PP, Gloor E, Gimeno TE, Griffin KL, Guerrieri R, Heskel MA, Huntingford C, Ishida FY, Kattge J, Lambers H, Liddell MJ, Lloyd J, Lusk CH, Martin RE, Maksimov AP, Maximov TC, Malhi Y, Medlyn BE, Meir P, Mercado LM, Mirotchnick N, Ng D, Niinemets Ü, O'Sullivan OS, Phillips OL, Poorter L, Poot P, Prentice IC, Salinas N, Rowland LM, Ryan MG, Sitch S, Slot M, Smith NG, Turnbull MH, VanderWel MC, Valladares F, Veneklaas EJ, Weerasinghe LK, Wirth C, Wright IJ, Wythers KR, Xiang J, Xiang S, Zaragoza-Castells J
(2015)
Global variability in leaf respiration in relation to climate, plant functional types and leaf traits.
The New phytologist
206(2):614-36.
|
|
|
2015
|
Waters MT, Scaffidi A, Flematti G, Smith SM
(2015)
Substrate-Induced Degradation of the α/β-Fold Hydrolase KARRIKIN INSENSITIVE2 Requires a Functional Catalytic Triad but Is Independent of MAX2.
Molecular Plant
8(5):814-7.
|
|
|
2015
|
de Busserolles F, Hart NS, Hunt DM, Davies WI, Marshall NJ, Clarke MW, Hahne D, Collin SP
(2015)
Spectral tuning in the eyes of deep-sea lanternfishes (Myctophidae): a novel sexually dimorphic intra-ocular filter.
Brain, Behavior and Evolution
85(2):77-93.
|
|
|
2015
|
Kishore K, De Pretis S, Lister R, Morelli MJ, Bianchi V, Amati B, Ecker JR, Pelizzola M
(2015)
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.
BMC Bioinformatics
16():313.
|
|
|
2015
|
Ndunguru J, Sseruwagi P, Tairo F, Stomeo F, Maina S, Djinkeng A, Kehoe M, Boykin LM
(2015)
Analyses of Twelve New Whole Genome Sequences of Cassava Brown Streak Viruses and Ugandan Cassava Brown Streak Viruses from East Africa: Diversity, Supercomputing and Evidence for Further Speciation.
PLoS ONE
10(10):e0139321.
|
|
|
2015
|
Quentin AG, Pinkard EA, Ryan MG, Tissue DT, Baggett LS, Adams HD, Maillard P, Marchand J, Landhäusser SM, Lacointe A, Gibon Y, Anderegg WR, Asao S, Atkin OK, Bonhomme M, Claye C, Chow PS, Clément-Vidal A, Davies NW, Dickman LT, Dumbur R, Ellsworth DS, Falk K, Galiano L, Grünzweig JM, Hartmann H, Hoch G, Hood S, Jones JE, Koike T, Kuhlmann I, Lloret F, Maestro M, Mansfield SD, Martínez-Vilalta J, Maucourt M, McDowell NG, Moing A, Muller B, Nebauer SG, Niinemets Ü, Palacio S, Piper F, Raveh E, Richter A, Rolland G, Rosas T, Saint Joanis B, Sala A, Smith RA, Sterck F, Stinziano JR, Tobias M, Unda F, Watanabe M, Way DA, Weerasinghe LK, Wild B, Wiley E, Woodruff DR
(2015)
Non-structural carbohydrates in woody plants compared among laboratories.
Tree Physiology
35(11):1146-65.
|
|
|
2015
|
Law YS, Zhang R, Guan X, Cheng S, Sun F, Duncan O, Murcha MW, Whelan J, Lim BL
(2015)
Phosphorylation and Dephosphorylation of the Presequence of Precursor MULTIPLE ORGANELLAR RNA EDITING FACTOR3 during Import into Mitochondria from Arabidopsis.
Plant Physiology
169(2):1344-55.
|
|
|
2015
|
Van Aken O, Van Breusegem F
(2015)
Licensed to Kill: Mitochondria, Chloroplasts, and Cell Death.
Trends in Plant Science
20(11):754-66.
|
|
|
2015
|
Mahatmanto T, Mylne JS, Poth AG, Swedberg JE, Kaas Q, Schaefer H, Craik DJ
(2015)
The evolution of Momordica cyclic peptides.
Molecular Biology and Evolution
32(2):392-405.
|
|
|
2015
|
Zhang X, Berkowitz O, Teixeira da Silva JA, Zhang M, Ma G, Whelan J, Duan J
(2015)
RNA-Seq analysis identifies key genes associated with haustorial development in the root hemiparasite Santalum album.
Frontiers in Plant Science
6:661.
|
|
|
2015
|
Henderson SW, Wege S, Qiu J, Blackmore DH, Walker AR, Tyerman SD, Walker RR, Gilliham M
(2015)
Grapevine and Arabidopsis Cation-Chloride Cotransporters Localize to the Golgi and Trans-Golgi Network and Indirectly Influence Long-Distance Ion Transport and Plant Salt Tolerance.
Plant Physiology
169(3):2215-29.
|
|
|
2015
|
Tataranni G, Santarcangelo M, Sofo A, Xiloyannis C, Tyerman SD, Dichio B
(2015)
Correlations between morpho-anatomical changes and radial hydraulic conductivity in roots of olive trees under water deficit and rewatering.
Tree Physiology
35(12):1356-65.
|
|
|
2015
|
Yang J, Ding C, Xu B, Chen C, Narsai R, Whelan J, Hu Z, Zhang M
(2015)
A Casparian strip domain-like gene, CASPL, negatively alters growth and cold tolerance.
Scientific Reports
5:14299.
|
|
|
2015
|
Lister R, Mukamel EA
(2015)
Turning over DNA methylation in the mind.
Frontiers in Neuroscience
9():252.
|
|
|
2015
|
Panigrahi R, Kubiszewski-Jakubiak S, Whelan J, Vrielink A
(2015)
The Design and Structure of Outer Membrane Receptors from Peroxisomes, Mitochondria, and Chloroplasts.
Structure
23(10):1783-1800.
|
|
|
2015
|
Mcquinn RP, Giovannoni JJ, Pogson BJ
(2015)
More than meets the eye: from carotenoid biosynthesis, to new insights into apocarotenoid signaling.
Current Opinion in Plant Biology
27():172-9.
|
|
|
2015
|
Wang C, Yue W, Ying Y, Wang S, Secco D, Liu Y, Whelan J, Tyerman SD, Shou H
(2015)
Rice SPX-Major Facility Superfamily3, a Vacuolar Phosphate Efflux Transporter, Is Involved in Maintaining Phosphate Homeostasis in Rice.
Plant Physiology
169(4):2822-31.
|
|
|
2015
|
Hontelez S, van Kruijsbergen I, Georgiou G, van Heeringen SJ, Bogdanovic O, Lister R, Veenstra GJ
(2015)
Embryonic transcription is controlled by maternally defined chromatin state.
Nature Communications
18;6:10148.
|
|
|
2015
|
De La Calle Mustienes E, Gómez-Skarmeta JL, Bogdanović O
(2015)
Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos.
Advances in Plant Biology (Book)
6():7-9.
|
|
|
2015
|
Delannoy E, Falcon de Longevialle A, Francs-Small C
(2015)
Mitochondrial RNA Transcript Analysis Assay of Arabidopsis Leaf Tissues
Bio-Protocol
5(20).
|
|
|
2015
|
Ermawar RA, Collins HM, Byrt CS, Betts NS, Henderson M, Shirley NJ, Schwerdt J, Lahnstein J, Fincher GB, Burton RA
(2015)
Distribution, structure and biosynthetic gene families of (1,3;1,4)-β-glucan in Sorghum bicolor.
Journal of Integrative Plant Biology
57(4):429-45.
|
|
|
2015
|
Corbin KR, Byrt CS, Bauer S, DeBolt S, Chambers D, Holtum JAM, Karem G, Henderson M, Lahnstein J, Beahan CT, Bacic A, Fincher GB, Betts NS, Burton RA
(2015)
Prospecting for Energy-Rich Renewable Raw Materials: Agave Leaf Case Study
PLoS ONE
9(4):1142-1154.
|
|
|
2015
|
Ermawar RA, Collins HM, Byrt CS, Henderson M, O'Donovan LA, Shirley NJ, Schwerdt JG, Lahnstein J, Fincher GB, Burton RA
(2015)
Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp.
BMC Plant Biology
15():236.
|
|
|
2015
|
Coast O, Ellis RH, Murdoch AJ, Quinones C, Jagadish KSV
(2015)
High night temperature induces contrasting responses for spikelet fertility, spikelet tissue temperature, flowering characteristics and grain quality in rice
Functional Plant Biology
42(2):149-161.
|
|
|
2015
|
Huang F, Ramakrishnan S, Pokhrel S, Pflueger C, Parnell TJ, Kasten MM, Currie SL, Bhachech N, Horikoshi M, Graves BJ, Cairns BR, Bhaskara S, Chandrasekharan MB
(2015)
Interaction of the Jhd2 H3K4 demethylase with chromatin is controlled by histone H2A surfaces and restricted by H2B ubiquitination
The Journal of Biological Chemistry
290(48):28760-77.
|
|
|
2015
|
Blackman LM, Cullerne DP, Torrena P, Taylor J, Hardham AR
(2015)
RNA-Seq Analysis of the Expression of Genes Encoding Cell Wall Degrading Enzymes during Infection of Lupin (Lupinus angustifolius) by Phytophthora parasitica
PLoS ONE
10(9):e0136899.
|
|
|
2015
|
Burgess AL, David R, Searle IR
(2015)
Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae
BMC Plant Biology
15:199.
|
|
|
2014
|
Schutze MK, Aketarawong N, Amornsak W, Armstrong KF, Augustinos AA, Barr N, Bo W, Bourtzis K, Boykin LM, Cáceres C, Cameron SL, Chapman TA, Chinvinijkul S, Chomič A, De Meyer M, Drosopoulou E, Englezou A, Ekesi S, Gariou-Papalexiou A, Geib SM, Hailstones D, Hasanuzzaman M, Haymer D, Hee AKW, Hendrichs J, Jessup A, Ji Q, Khamis FM, Krosch MN, Mahmood K, Malacrida AR, Mavragani-Tsipidou P, Mwatawala M, Nishida R, Ono H, Reyes J, Rubinoff D, San Jose M, Shelly TE, Srikachar S, Tan KH, Thanaphum S, Ul-Haq I, Vijaysegaran S, Wee SL, Yesmin F, Zacharopoulou A, Clarke AR
(2014)
Synonymization of key pest species within the Bactrocera dorsalis species complex (Diptera: Tephritidae): taxonomic changes based on 20 years of integrative morphological, molecular, cytogenetic, behavioral, and chemoecological data
40(2):456-471.
|
|
|
2014
|
Babis M, Holman L, Fenske R, Thomas ML, Baer B
(2014)
Cuticular lipids correlate with age and insemination status in queen honeybees
61:337-345.
|
|
|
2014
|
Boykin LM, De Barro PJ
(2014)
A practical guide to identifying members of the Bemisia tabaci species complex: and other morphologically identical species
Frontiers in Ecology and Evolution
2.
|
|
|
2014
|
Smith SM
(2014)
Q&A: What are strigolactones and why are they important to plants and soil microbes?
BMC Biology
12:19.
|
|
|
2014
|
Taylor NL, Fenske R, Castleden I, Tomaz T, Nelson CJ, Millar AH
(2014)
Selected reaction monitoring to determine protein abundance in Arabidopsis using the Arabidopsis proteotypic predictor.
Plant Physiology
164(2):525-36.
|
|
|
2014
|
Tian Q, Zhang X, Ramesh S, Gilliham M, Tyerman SD, Zhang WH
(2014)
Ethylene negatively regulates aluminium-induced malate efflux from wheat roots and tobacco cells transformed with TaALMT1.
Journal of Experimental Botany
65(9):2415-26.
|
|
|
2014
|
Luna E, van Hulten M, Zhang Y, Berkowitz O, López A, Pétriacq P, Sellwood MA, Chen B, Burrell M, van de Meene A, Pieterse CM, Flors V, Ton J
(2014)
Plant perception of β-aminobutyric acid is mediated by an aspartyl-tRNA synthetase.
Nature Chemical Biology
10(6):450-6.
|
|
|
2014
|
Bussell JD, Reichelt M, Wiszniewski AA, Gershenzon J, Smith SM
(2014)
Peroxisomal ATP-binding cassette transporter COMATOSE and the multifunctional protein abnormal INFLORESCENCE MERISTEM are required for the production of benzoylated metabolites in Arabidopsis seeds.
Plant Physiology
164(1):48-54.
|
|
|
2014
|
Secco D, Shou H, Whelan J, Berkowitz O
(2014)
RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin.
BMC Genomics
15:230.
|
|
|
2014
|
Waters MT, Scaffidi A, Sun YK, Flematti GR, Smith SM
(2014)
The karrikin response system of Arabidopsis.
The Plant Journal
79(4):623-31.
|
|
|
2014
|
Shingaki-Wells R, Millar AH, Whelan J, Narsai R
(2014)
What happens to plant mitochondria under low oxygen? An omics review of the responses to low oxygen and reoxygenation.
Plant, cell & environment
37(10):2260-77.
|
|
|
2014
|
Bogdanović O
(2014)
Invertebrate epigenomics: the brave new world of the spineless.
Briefings in Functional Genomics
13(3):189-90.
|
|
|
2014
|
Brown GG, Colas des Francs-Small C, Ostersetzer-Biran O
(2014)
Group II intron splicing factors in plant mitochondria.
Frontiers in Plant Science
Feb 18;5:35.
|
|
|
2014
|
Millar AH, Taylor NL
(2014)
Subcellular proteomics-where cell biology meets protein chemistry.
Frontiers in Plant Science
Feb 26;5:55.
|
|
|
2014
|
Xin X, Tian Q, Yin G, Chen X, Zhang J, Ng S, Lu X
(2014)
Reduced mitochondrial and ascorbate-glutathione activity after artificial ageing in soybean seed.
J. Plant Physiol
171(2):140-7.
|
|
|
2014
|
Ng S, De Clercq I, Van Aken O, Law SR, Ivanova A, Willems P, Giraud E, Van Breusegem F, Whelan J
(2014)
Anterograde and retrograde regulation of nuclear genes encoding mitochondrial proteins during growth, development, and stress.
Molecular Plant
7(7):1075-93.
|
|
|
2014
|
Wang C, Li S, Ng S, Zhang B, Zhou Y, Whelan J, Wu P, Shou H
(2014)
Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.
Journal of Experimental Botany
65(15):4149-57.
|
|
|
2014
|
Murcha MW, Kubiszewski-Jakubiak S, Wang Y, Whelan J
(2014)
Evidence for interactions between the mitochondrial import apparatus and respiratory chain complexes via Tim21-like proteins in Arabidopsis.
Frontiers in Plant Science
5:82.
|
|
|
2014
|
Taylor NL, Ströher E, Millar AH
(2014)
Arabidopsis organelle isolation and characterization.
Methods in Molecular Biology
1062:551-72.
|
|
|
2014
|
Secco D, Whelan J
(2014)
Toward deciphering the genome-wide transcriptional responses of rice to phosphate starvation and recovery.
Plant Signaling and Behavior
9(4):e28319.
|
|
|
2014
|
Small I, Puchta H
(2014)
Emerging tools for synthetic biology in plants.
The Plant Journal
78(5):725-6.
|
|
|
2014
|
Mahatmanto T, Poth AG, Mylne JS, Craik DJ
(2014)
A comparative study of extraction methods reveals preferred solvents for cystine knot peptide isolation from Momordica cochinchinensis seeds.
Fitoterapia
1072:453-67.
|
|
|
2014
|
Brown TB, Cheng R, Sirault XR, Rungrat T, Murray KD, Trtilek M, Furbank RT, Badger M, Pogson BJ, Borevitz JO
(2014)
TraitCapture: genomic and environment modelling of plant phenomic data.
Current Opinion in Plant Biology
18:73-9.
|
|
|
2014
|
Colas des Francs-Small C, Small I
(2014)
Surrogate mutants for studying mitochondrially encoded functions.
Biochimie
100:234-42.
|
|
|
2014
|
Paynter E, Baer-Imhoof B, Linden M, Lee-Pullen T, Heel K, Rigby P, Baer B
(2014)
Flow cytometry as a rapid and reliable method to quantify sperm viability in the honeybee Apis mellifera.
Cytometry Part A
85(5):463-72.
|
|
|
2014
|
Nelson CJ, Li L, Millar AH
(2014)
Quantitative analysis of protein turnover in plants.
Proteomics
14(4-5):579-92.
|
|
|
2014
|
Estavillo GM, Verhertbruggen Y, Scheller HV, Pogson BJ, Heazlewood JL, Ito J
(2014)
Isolation of the plant cytosolic fraction for proteomic analysis.
Methods in Molecular Biology
1072:453-67.
|
|
|
2014
|
Huang S, Jacoby RP, Millar AH, Taylor NL
(2014)
Plant mitochondrial proteomics.
Methods in Molecular Biology
1072:499-525.
|
|
|
2014
|
Law SR, Narsai R, Whelan J
(2014)
Mitochondrial biogenesis in plants during seed germination.
Mitochondrion
19 Pt B:214-21.
|
|
|
2014
|
Vandeleur RK, Sullivan W, Athman A, Jordans C, Gilliham M, Kaiser BN, Tyerman SD
(2014)
Rapid shoot-to-root signalling regulates root hydraulic conductance via aquaporins.
Plant, Cell & Environment
37(2):520-38.
|
|
|
2014
|
Murcha MW, Wang Y, Narsai R, Whelan J
(2014)
The plant mitochondrial protein import apparatus - the differences make it interesting.
Biochimica et Biophysica Acta - General Subjects
1840(4):1233-45.
|
|
|
2014
|
Ivanova A, Law SR, Narsai R, Duncan O, Lee JH, Zhang B, Van Aken O, Radomiljac JD, Van Der Merwe M, Yi K, Whelan J
(2014)
A Functional Antagonistic Relationship between Auxin and Mitochondrial Retrograde Signaling Regulates Alternative Oxidase1a Expression in Arabidopsis.
Plant Physiology
165(3):1233-1254.
|
|
|
2014
|
Chaumont F, Tyerman SD
(2014)
Aquaporins: highly regulated channels controlling plant water relations.
Plant Physiology
164(4):1600-18.
|
|
|
2014
|
Kemp MW, Miura Y, Payne MS, Jobe AH, Kallapur SG, Saito M, Stock SJ, Spiller OB, Ireland DJ, Yaegashi N, Clarke M, Hahne D, Rodger J, Keelan JA, Newnham JP
(2014)
Maternal intravenous administration of azithromycin results in significant fetal uptake in a sheep model of second trimester pregnancy.
58(11):6581-91.
|
|
|
2014
|
Bainbridge K, Bennett T, Crisp P, Leyser O, Turnbull C
(2014)
Grafting in Arabidopsis.
Methods in Molecular Biology
1062():155-63.
|
|
|
2014
|
Blanco NE, Guinea-Diíaz M, Whelan J, Strand Å
(2014)
Interaction between plastid and mitochondrial retrograde signalling pathways during changes to plastid redox status
Philos. Trans. R. Soc. B-Biol. Sci.
369(1640):20130231.
|
|
|
2014
|
Panigrahi R, Whelan J, Vrielink A
(2014)
Exploring ligand recognition, selectivity and dynamics of TPR domains of chloroplast Toc64 and mitochondria Om64 from Arabidopsis thaliana.
Journal Of Molecular Recognition
27(6):402-14.
|
|
|
2014
|
Peng Y, Lee-Pullen TF, Heel K, Millar AH, Baer B
(2014)
Quantifying spore viability of the honey bee pathogen Nosema apis using flow cytometry.
Cytometry Part A
85(5):454-62.
|
|
|
2014
|
Chen W, Taylor NL, Chi Y, Millar AH, Lambers H, Finnegan PM
(2014)
The metabolic acclimation of Arabidopsis thaliana to arsenate is sensitized by the loss of mitochondrial LIPOAMIDE DEHYDROGENASE2, a key enzyme in oxidative metabolism.
Plant, Cell & Environment
37(3):684-95.
|
|
|
2014
|
Simmons LW, Beveridge M, Li L, Tan YF, Millar AH
(2014)
Ontogenetic changes in seminal fluid gene expression and the protein composition of cricket seminal fluid.
Evolution And Development
16(2):101-9.
|
|
|
2014
|
Cheah MH, Millar AH, Myers RC, Day DA, Roth J, Hillier W, Badger MR
(2014)
Online oxygen kinetic isotope effects using membrane inlet mass spectrometry can differentiate between oxidases for mechanistic studies and calculation of their contributions to oxygen consumption in whole tissues.
Analytical Chemistry
86(10):5171-8.
|
|
|
2014
|
Barkan A, Small I
(2014)
Pentatricopeptide repeat proteins in plants.
Annual Review of Plant Biology
65:415-42.
|
|
|
2014
|
Cohen S, Zmudjak M, Colas des Francs-Small C, Malik S, Shaya F, Keren I, Belausov E, Many Y, Brown GG, Small I, Ostersetzer-Biran O
(2014)
nMAT4, a maturase factor required for nad1 pre-mRNA processing and maturation, is essential for holocomplex I biogenesis in Arabidopsis mitochondria.
The Plant Journal
78(2):253-68.
|
|
|
2014
|
Yagi Y, Nakamura T, Small I
(2014)
The potential for manipulating RNA with pentatricopeptide repeat proteins.
The Plant Journal
78(5):772-82.
|
|
|
2014
|
Li XJ, Zhang YF, Hou M, Sun F, Shen Y, Xiu ZH, Wang X, Chen ZL, Sun SS, Small I, Tan BC
(2014)
Small kernel1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize and rice.
The Plant Journal
79(5):797-809.
|
|
|
2014
|
Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, Li WQ, Vallender EJ, Wagner U, Qin JY, Michelini KJ, Bugarija B, Park D, Aryee E, Stricker T, Zhou J, White KP, Ren B, Schroth GP, Ecker JR, Xiang AP, Lahn BT
(2014)
Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells.
Genome Research
24(2):267-80.
|
|
|
2014
|
Yu W, Briones V, Lister R, McIntosh C, Han Y, Lee EY, Ren J, Terashima M, Leighty RM, Ecker JR, Muegge K
(2014)
CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity.
Proceedings of the National Academy of Sciences of the United States of America
111(16):5890-5.
|
|
|
2014
|
Colas Des Francs-Small C, Falcon De Longevialle A, Li Y, Lowe E, Tanz SK, Smith C, Bevan MW, Small I
(2014)
The Pentatricopeptide Repeat Proteins TANG2 and ORGANELLE TRANSCRIPT PROCESSING439 Are Involved in the Splicing of the Multipartite nad5 Transcript Encoding a Subunit of Mitochondrial Complex I.
Plant Physiology
165(4):1409-1416.
|
|
|
2014
|
Smith SM, Li J
(2014)
Signalling and responses to strigolactones and karrikins.
Current Opinion in Plant Biology
21:23-29.
|
|
|
2014
|
Scaffidi A, Waters MT, Sun YK, Skelton BW, Dixon KW, Ghisalberti EL, Flematti GR, Smith SM
(2014)
Strigolactone Hormones and Their Stereoisomers Signal through Two Related Receptor Proteins to Induce Different Physiological Responses in Arabidopsis.
Plant Physiology
165(3):1221-1232.
|
|
|
2014
|
Lu Y, Zhou W, Wei L, Li J, Jia J, Li F, Smith SM, Xu J
(2014)
Regulation of the cholesterol biosynthetic pathway and its integration with fatty acid biosynthesis in the oleaginous microalga Nannochloropsis oceanica.
Biotechnology For Biofuels
7:81.
|
|
|
2014
|
Avendaño-Vázquez AO, Cordoba E, Llamas E, San Román C, Nisar N, De La Torre S, Ramos-Vega M, Gutiérrez-Nava MD, Cazzonelli CI, Pogson BJ, León P
(2014)
An Uncharacterized Apocarotenoid-Derived Signal Generated in ζ-Carotene Desaturase Mutants Regulates Leaf Development and the Expression of Chloroplast and Nuclear Genes in Arabidopsis.
The Plant Cell
26(6):2524-2537.
|
|
|
2014
|
Boussardon C, Avon A, Kindgren P, Bond CS, Challenor M, Lurin C, Small I
(2014)
The cytidine deaminase signature HxE(x)n CxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1.
The New phytologist
203(4):1090-5.
|
|
|
2014
|
Ayub G, Zaragoza-Castells J, Griffin KL, Atkin OK
(2014)
Leaf respiration in darkness and in the light under pre-industrial, current and elevated atmospheric CO2 concentrations.
Plant Science
Sep;226:120-30.
|
|
|
2014
|
Tanz SK, Castleden I, Hooper CM, Small I, Millar AH
(2014)
Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family.
Frontiers in Plant Science
Aug 12;5:396.
|
|
|
2014
|
Nelson CJ, Alexova R, Jacoby RP, Millar AH
(2014)
Proteins with high turnover rate in barley leaves estimated by proteome analysis combined with in planta isotope labeling.
Plant Physiology
166(1):91-108.
|
|
|
2014
|
Grimmer MR, Stolzenburg S, Ford E, Lister R, Blancafort P, Farnham PJ
(2014)
Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation.
Nucleic Acids Research
42(16):10856-68.
|
|
|
2014
|
Byrt CS, Xu B, Krishnan M, Lightfoot DJ, Athman A, Jacobs AK, Watson-Haigh NS, Munns R, Tester M, Gilliham M
(2014)
The Na(+) transporter, TaHKT1;5-D, limits shoot Na(+) accumulation in bread wheat.
The Plant Journal
80(3):516-26.
|
|
|
2014
|
Gauthier PP, Crous KY, Ayub G, Duan H, Weerasinghe LK, Ellsworth DS, Tjoelker MG, Evans JR, Tissue DT, Atkin OK
(2014)
Drought increases heat tolerance of leaf respiration in Eucalyptus globulus saplings grown under both ambient and elevated atmospheric [CO2] and temperature.
Journal of Experimental Botany
65(22):6471-85.
|
|
|
2014
|
Zhang B, Van Aken O, Thatcher L, De Clercq I, Duncan O, Law SR, Murcha MW, Van Der Merwe M, Seifi HS, Carrie C, Cazzonelli C, Radomiljac J, Höfte M, Singh KB, Van Breusegem F, Whelan J
(2014)
The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana.
The Plant Journal
80(4):709-27.
|
|
|
2014
|
Athman A, Tanz SK, Conn VM, Jordans C, Mayo GM, Ng WW, Burton RA, Conn SJ, Gilliham M
(2014)
Protocol: a fast and simple in situ PCR method for localising gene expression in plant tissue.
Plant Methods
Sep 18;10:29.
|
|
|
2014
|
Wiszniewski AA, Bussell JD, Long RL, Smith SM
(2014)
Knockout of the two evolutionarily conserved peroxisomal 3-ketoacyl-CoA thiolases in Arabidopsis recapitulates the abnormal inflorescence meristem 1 phenotype.
Journal of Experimental Botany
65(22):6723-33.
|
|
|
2014
|
Wang HL, Yang J, Boykin LM, Zhao QY, Wang YJ, Liu SS, Wang XW
(2014)
Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex.
Scientific Reports
4:6351.
|
|
|
2014
|
Van Norman JM, Zhang J, Cazzonelli CI, Pogson BJ, Harrison PJ, Bugg TD, Chan KX, Thompson AJ, Benfey PN
(2014)
Periodic root branching in Arabidopsis requires synthesis of an uncharacterized carotenoid derivative.
Proceedings of the National Academy of Sciences of the United States of America
111(13):E1300-9.
|
|
|
2014
|
Yu W, McIntosh C, Lister R, Zhu I, Han Y, Ren J, Landsman D, Lee E, Briones V, Terashima M, Leighty R, Ecker JR, Muegge K
(2014)
Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways.
Genome Research
24(10):1613-23.
|
|
|
2014
|
Murcha MW, Kmiec B, Kubiszewski-Jakubiak S, Teixeira PF, Glaser E, Whelan J
(2014)
Protein import into plant mitochondria: signals, machinery, processing, and regulation.
Journal of Experimental Botany
65(22):6301-35.
|
|
|
2014
|
Hooper CM, Hawes SM, Kees UR, Gottardo NG, Dallas PB
(2014)
Gene Expression Analyses of the Spatio-Temporal Relationships of Human Medulloblastoma Subgroups during Early Human Neurogenesis.
PLoS ONE
9(11):e112909.
|
|
|
2014
|
Cazzonelli CI, Nisar N, Roberts AC, Murray KD, Borevitz JO, Pogson BJ
(2014)
A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation.
Frontiers in Plant Science
5:533.
|
|
|
2014
|
Wang Y, Law SR, Ivanova A, Van Aken O, Kubiszewski-Jakubiak S, Uggalla V, Van Der Merwe M, Duncan O, Narsai R, Whelan J, Murcha MW
(2014)
The mitochondrial protein import component, TRANSLOCASE OF THE INNER MEMBRANE17-1, plays a role in defining the timing of germination in Arabidopsis.
Plant Physiology
166(3):1420-35.
|
|
|
2014
|
Jayasena AS, Secco D, Bernath-Levin K, Berkowitz O, Whelan J, Mylne JS
(2014)
Next generation sequencing and de novo transcriptomics to study gene evolution.
Plant Methods
10(1):34.
|
|
|
2014
|
Munns R, Schmidt S, Beveridge C
(2014)
Plants in Action
Functional Plant Biology
2nd Edition.
|
|
|
2014
|
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH
(2014)
SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome
Bioinformatics
1;30(23):3356-64.
|
|
|
2014
|
Péret B, Desnos T, Jost R, Kanno S, Berkowitz O, Nussaume L
(2014)
Root architecture responses: in search of phosphate.
Plant Physiology
166(4):1713-23.
|
|
|
2014
|
Okuda K, Shoki H, Arai M, Shikanai T, Small I, Nakamura T
(2014)
Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing.
The Plant Journal
80(5):870-82.
|
|
|
2014
|
Polston JE, De Barro P, Boykin LM
(2014)
Transmission specificities of plant viruses with the newly identified species of the Bemisia tabaci species complex.
Pest Management Science
70(10):1547-52.
|
|
|
2014
|
Guan R, Qu Y, Guo Y, Yu L, Liu Y, Jiang J, Chen J, Ren Y, Liu G, Tian L, Jin L, Liu Z, Hong H, Chang R, Gilliham M, Qiu L
(2014)
Salinity tolerance in soybean is modulated by natural variation in GmSALT3.
The Plant Journal
80(6):937-50.
|
|
|
2014
|
Henderson SW, Baumann U, Blackmore DH, Walker AR, Walker RR, Gilliham M
(2014)
Shoot chloride exclusion and salt tolerance in grapevine is associated with differential ion transporter expression in roots.
BMC Plant Biology
14(1):273.
|
|
|
2014
|
Gavrin A, Kaiser BN, Geiger D, Tyerman SD, Wen Z, Bisseling T, Fedorova EE
(2014)
Adjustment of host cells for accommodation of symbiotic bacteria: vacuole defunctionalization, HOPS suppression, and TIP1g retargeting in Medicago.
The Plant Cell
26(9):3809-22.
|
|
|
2014
|
Chiasson DM, Loughlin PC, Mazurkiewicz D, Mohammadidehcheshmeh M, Fedorova EE, Okamoto M, Mclean E, Glass AD, Smith SE, Bisseling T, Tyerman SD, Day DA, Kaiser BN
(2014)
Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport.
Proceedings of the National Academy of Sciences of the United States of America
111(13):4814-9.
|
|
|
2014
|
Atkin OK, Meir P, Turnbull MH
(2014)
Improving representation of leaf respiration in large-scale predictive climate-vegetation models.
The New phytologist
202(3):743-8.
|
|
|
2014
|
Weerasinghe LK, Creek D, Crous KY, Xiang S, Liddell MJ, Turnbull MH, Atkin OK
(2014)
Canopy position affects the relationships between leaf respiration and associated traits in a tropical rainforest in Far North Queensland.
Tree Physiology
34(6):564-84.
|
|
|
2014
|
Heskel MA, Greaves HE, Turnbull MH, O'Sullivan OS, Shaver GR, Griffin KL, Atkin OK
(2014)
Thermal acclimation of shoot respiration in an Arctic woody plant species subjected to 22 years of warming and altered nutrient supply.
Global change biology
20(8):2618-30.
|
|
|
2014
|
Noutsos C, Borevitz JO, Hodges SA
(2014)
Gene flow between nascent species: geographic, genotypic and phenotypic differentiation within and between Aquilegia formosa and A. pubescens.
Molecular Ecology
23(22):5589-98.
|
|
|
2014
|
Grabowski PP, Morris GP, Casler MD, Borevitz JO
(2014)
Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass.
Molecular Ecology
23(16):4059-73.
|
|
|
2014
|
Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ
(2014)
New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating.
Plant Physiology
165(1):175-85.
|
|
|
2014
|
Donoghue MT, Fort A, Clifton R, Zhang X, Mckeown PC, Voigt-Zielinksi ML, Borevitz JO, Spillane C
(2014)
C(m)CGG methylation-independent parent-of-origin effects on genome-wide transcript levels in isogenic reciprocal F1 triploid plants.
DNA Research
21(2):141-51.
|
|
|
2014
|
Li Y, Cheng R, Spokas KA, Palmer AA, Borevitz JO
(2014)
Genetic variation for life history sensitivity to seasonal warming in Arabidopsis thaliana.
GENETICS
196(2):569-77.
|
|
|
2014
|
Welch MD, Lister R
(2014)
Epigenomics and the control of fate, form and function in social insects
Current Opinion in Insect Science
Jul(1):31-38.
|
|
|
2014
|
Baby T, Hocking B, Tyerman SD, Gilliham M, Collins C
(2014)
Modified Method for Producing Grapevine Plants in Controlled Environments
American Journal of Enology and Viticulture
65(2):261-267.
|
|
|
2014
|
Nisar N, Cuttriss AJ, Pogson BJ, Cazzonelli CI
(2014)
The promoter of the Arabidopsis PIN6 auxin transporter enabled strong expression in the vasculature of roots, leaves, floral stems and reproductive organs.
Plant Signaling and Behavior
9(1):e27898.
|
|
|
2014
|
Heskel MA, Bitterman D, Atkin OK, Turnbull MH, Griffin KL
(2014)
Seasonality of foliar respiration in two dominant plant species from the Arctic tundra: response to long-term warming and short-term temperature variability
Functional Plant Biology
41(3) 287-300.
|
|
|
2014
|
Polati R, Cecconi D, Dosselli R, Zaccarin M, Millioni R
(2014)
Improvement of polar 2-D electrophoresis for proteomic applications
Amino Acids
46(4):1143-6.
|
|
|
2014
|
Dosselli R, Ruiz-Gonzales R, Moret F, Agnolon V Compagnin C, Mognato M, Sella V, Agut M, Nonell S, Gobbo M, Reddi E
(2014)
Synthesis, spectroscopic and photophysical characterization and photosensitizing activity toward prokaryotic and Eukaryotic cells of porphyrin-magainin and -buforin conjugates.
Acta Crystallographica Section D-Biological Crystallography
57(4):1403-1415.
|
|
|
2014
|
Pages A, Welsh DT, Teasdale PR, Grice K, Vacher M, Bennett WW, Visscher PT
(2014)
Diel fluctuations in solute distributions and biogeochemical cycling in a hypersaline microbial mat from Shark Bay, WA
Marine Chemistry
167.
|
|
|
2014
|
Pagès A, Grice K, Vacher M, Teasdale PR, Welsh DT, Bennett W, Greenwood P
(2014)
Characterising microbial communities and processes in a modern stromatolite (Shark Bay) using lipid biomarkers and two-dimensional distributions of porewater solutes
Environmental Microbiology
16.
|
|
|
2014
|
Blackman LM, Cullerne DP, Hardham AR
(2014)
Bioinformatic characterisation of genes encoding cell wall degrading enzymes in the Phytophthora parasitica genome
BMC Genomics
15(1).
|
|
|
2014
|
Carey AM, Hacking K, Picken N, Honkanen S, Kelly S, Niedzwiedzki DM, Blankenship RE, Shimizu Y, Wang-Otomo ZY, Cogdell RJ
(2014)
Characterisation of the LH2 spectral variants produced by the photosynthetic purple sulphur bacterium Allochromatium vinosum.
Biochimica et Biophysica Acta - Bioenergetics
1837.
|
|
|
2014
|
Kamran M, Khan AL, Waqas M, Imran QM, Hamayun M, Kang S, Kim Y, Kim M, Lee IJ
(2014)
Effects of plant-derived smoke on the growth dynamics of Barnyard Grass (Echinochloa crus-galli)
Acta Agriculturae Scandinavica, Section B - Soil & Plant Science
64.
|
|
|
2014
|
Li J, Long Y, Qi GN, Li J, Xu ZJ, Wu WH, Wang Y
(2014)
The Os-AKT1 channel is critical for K+ uptake in rice roots and is modulated by the rice CBL1-CIPK23 complex.
The Plant Cell
26(8):3387-402.
|
|
|
2014
|
Kemen AC, Honkanen S, Melton RE, Findlay KC, Mugford ST, Hayashi K, Haralampidis K, Rosser S, Osbourn A
(2014)
Investigation of triterpene synthesis and regulation in oats reveals a role for β-amyrin in determining root epidermal cell patterning
Proceedings of the National Academy of Sciences of the United States of America
111(23):8679-84.
|
|
|
2014
|
Jenkins TG, Aston KI, Pflueger C, Cairns BR, Carrell DT
(2014)
Age-associated sperm DNA methylation alterations: possible implications in offspring disease susceptibility
PLOS Genetics
10(7):e1004458.
|
|
|
2014
|
Wang L, Feng X, Zhao H, Wang L, An L, Qiu QS
(2014)
Functional analysis of the Na+,K+/H+ antiporter PeNHX3 from the tree halophyte Populus euphratica in yeast by model-guided mutagenesis.
PLoS ONE
9(8):e104147.
|
|
|
2013
|
Li L, Nelson CJ, Carrie C, Gawryluk RM, Solheim C, Gray MW, Whelan J, Millar AH
(2013)
Subcomplexes of ancestral respiratory complex I subunits rapidly turn over in vivo as productive assembly intermediates in Arabidopsis.
The Journal of Biological Chemistry
288(8):5707-17.
|
|
|
2013
|
Alexova R, Millar AH
(2013)
Proteomics of phosphate use and deprivation in plants.
Proteomics
13(3-4):609-23.
|
|
|
2013
|
Carrie C, Small I
(2013)
A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts.
Biochimica et Biophysica Acta - General Subjects
1833(2):253-9.
|
|
|
2013
|
Duncan O, Murcha MW, Whelan J
(2013)
Unique components of the plant mitochondrial protein import apparatus
Biochimica et Biophysica Acta - Molecular Cell Research
1833(2):304-13.
|
|
|
2013
|
Wang L, Ying Y, Narsai R, Ye L, Zheng L, Tian J, Whelan J, Shou H
(2013)
Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa.
Plant, cell & environment
36(1):224-36.
|
|
|
2013
|
Whelan J, Giraud E
(2013)
Genetics of Mitochondria
Brenner's Online Encyclopedia of Genetics (2nd Edition)
433-435.
|
|
|
2013
|
Huang S, Taylor NL, Ströher E, Fenske R, Millar AH
(2013)
Succinate dehydrogenase assembly factor 2 is needed for assembly and activity of mitochondrial complex II and for normal root elongation in Arabidopsis.
The Plant Journal
73(3):429-41.
|
|
|
2013
|
Carrie C, Murcha MW, Giraud E, Ng S, Zhang MF, Narsai R, Whelan J
(2013)
How do plants make mitochondria?
Planta
237(2):429-39.
|
|
|
2013
|
Kupsch C, Ruwe H, Gusewski S, Tillich M, Small ID, Schmitz-Linneweber C
(2013)
Arabidopsis Chloroplast RNA binding proteins CP31A and CP29A define large, overlapping transcript pools and confer cold stress tolerance by influencing multiple RNA processing steps in chloroplasts
The Plant Cell
24(10):4266-80.
|
|
|
2013
|
Duncan O, van der Merwe MJ, Daley DO, Whelan J
(2013)
The Outer Mitochondrial Membrane In Higher Plants
Trends in Plant Science
18(4):207-17.
|
|
|
2013
|
Ng S, Giraud E, Duncan O, Law SR, Wang Y, Xu L, Narsai R, Carrie C, Walker H, Day DA, Blanco NE, Strand Å, Whelan J, Ivanova A
(2013)
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses.
The Journal of Biological Chemistry
288(5):3449-59.
|
|
|
2013
|
Xu L, Carrie C, Law SR, Murcha MW, Whelan J
(2013)
Acquisition, conservation, and loss of dual-targeted proteins in land plants.
Plant Physiology
161(2):644-62.
|
|
|
2013
|
Narsai R, Whelan J
(2013)
Genome-wide expression profiling during germination in plants
Introduction to Sequence and Genome Analysis
(in press).
|
|
|
2013
|
Bythell-Douglas R, Waters MT, Scaffidi A, Flematti GR, Smith SM, Bond CS
(2013)
The structure of the karrikin-insensitive protein (KAI2) in Arabidopsis thaliana.
PLoS ONE
8(1):e54758.
|
|
|
2013
|
Tanz SK, Castleden I, Hooper C, Vacher M, Small I, Millar AH
(2013)
SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis
Nucleic Acids Research
41(Database issue):D1185-91.
|
|
|
2013
|
Jacoby RP, Millar AH, Taylor NL
(2013)
Application of selected reaction monitoring mass spectrometry to field-grown crop plants to allow dissection of the molecular mechanisms of abiotic stress tolerance.
Frontiers in Plant Science
4:20.
|
|
|
2013
|
Huang S, Shingaki-Wells RN, Taylor NL, Millar AH
(2013)
The rice mitochondria proteome and its response during development and to the environment.
Frontiers in Plant Science
4:16.
|
|
|
2013
|
Lee CP, Taylor NL, Millar AH
(2013)
Recent advances in the composition and heterogeneity of the Arabidopsis mitochondrial proteome
Frontiers in Plant Science
2013;4:4.
|
|
|
2013
|
Huang S, Millar AH
(2013)
Sequence diversity and conservation in factors influencing succinate dehydrogenase flavinylation
Plant Signaling and Behavior
8(2):e22815.
|
|
|
2013
|
Bailey NW, Veltsos P, Tan YF, Millar AH, Ritchie MG, Simmons LW
(2013)
Tissue-specific transcriptomics in the field cricket Teleogryllus oceanicus.
G3
3(2):225-30.
|
|
|
2013
|
Huang S, Jacoby RP, Shingaki-Wells RN, Li L, Millar AH
(2013)
Differential induction of mitochondrial machinery by light intensity correlates with changes in respiratory metabolism and photorespiration in rice leaves.
The New phytologist
198(1):103-115.
|
|
|
2013
|
Simmons LW, Tan YF, Millar AH
(2013)
Sperm and seminal fluid proteomes of the field cricket Teleogryllus oceanicus: identification of novel proteins transferred to females at mating.
Insect Molecular Biology
22(1):115-30.
|
|
|
2013
|
Caliandro R, Nagel KA, Kastenholz B, Bassi R Li Z, Niyogi KK, Pogson BJ, Schurr U, Matsubura S
(2013)
Effects of altered alpha and beta-branch carotenoid biosynthesis on photoprotection and whole-plant acclimation of Arabidopsis to photo-oxidative stress
Plant, Cell & Environment
36(2):438-53.
|
|
|
2013
|
Carmody M, Pogson BJ
(2013)
Systemic photo-oxidative stress signaling
Long-Distance Systemic Signaling and Communication in Plants
Vol 19. Ed F. Baluska, Springer, Dordrecht, pp 251-274.
|
|
|
2013
|
Husen J, Förster B, Chow WS, Pogson BJ, Osmond CB
(2013)
Decreased photochemical efficiency of Photosystem II following sunlight exposure of shade-grown leaves of avocado (Persea americana Mill.): because of, or in spite of, two kinetically distinct xanthophyll cycles?
Plant Physiology
161(2):836-52.
|
|
|
2013
|
Chan KX, Wirtz M, Phua SY, Estavillo GM, Pogson BJ
(2013)
Balancing metabolites in drought: the sulfur assimilation conundrum.
Trends in Plant Science
18(1):18-29.
|
|
|
2013
|
Xie W, Schultz M, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, Zhu Y, Kim A, Nery J, Urich MA, Kuan S, Yen C, Klugman S, Yu P, Suknuntha K, Propson NE, Chen H, Edsall LE, Wagner U, Li Y, Ye Z, Kulkarni A, Xuan Z, Chung W, Chi NC, Antosiewicz-Bourget J, Slukvin I, Stewart R, Zhang MQ, Wang W, Thomson JA, Ecker JR, Ren B
(2013)
Epigenomic Analysis of Multi-lineage Differentiation of Human Embryonic Stem Cells
Cell
153(5):1134-48.
|
|
|
2013
|
Van Aken O, Zhang B, Law S, Narsai R, Whelan J
(2013)
AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins.
Plant Physiology
162(1):254-71.
|
|
|
2013
|
Xu J, Yang J, Wu Z, Liu H, Huang F, Wu Y, Carrie C, Narsai R, Murcha M, Whelan J, Wu P
(2013)
Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice.
Plant Physiology
161(4):2036-48.
|
|
|
2013
|
Narsai R, Wang C, Chen J, Wu J, Shou H, Whelan J
(2013)
Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress.
BMC Genomics
14:93.
|
|
|
2013
|
Haïli N, Arnal N, Quadrado M, Amiar S, Tcherkez G, Dahan J, Briozzo P, Colas des Francs-Small C, Vrielynck N, Mireau H
(2013)
The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria.
Nucleic Acids Research
41(13):6650-63.
|
|
|
2013
|
Zmudjak M, Colas des Francs-Small C, Keren I, Shaya F, Belausov E, Small I, Ostersetzer-Biran O
(2013)
mCSF1, a nucleus-encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis.
The New phytologist
199(2):379-94.
|
|
|
2013
|
Chateigner-Boutin AL, Colas Des Francs-Small C, Fujii S, Okuda K, Tanz SK, Small I
(2013)
The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing.
The Plant Journal
74(6):935-45.
|
|
|
2013
|
Waters S, Gilliham M, Hrmova M
(2013)
Plant High-Affinity Potassium (HKT) Transporters Involved in Salinity Tolerance: Structural Insights to Probe Differences in Ion Selectivity.
International Journal of Molecular Sciences
14(4):7660-80.
|
|
|
2013
|
Conn SJ, Hocking B, Dayod M, Xu B, Athman A, Henderson S, Aukett L, Conn V, Shearer MK, Fuentes S, Tyerman SD, Gilliham M
(2013)
Protocol: optimising hydroponic growth systems for nutritional and physiological analysis of Arabidopsis thaliana and other plants.
Plant Methods
Feb 5;9(1):4.
|
|
|
2013
|
Small I
(2013)
Mitochondrial genomes as living 'fossils'.
BMC Biology
Apr 15;11:30.
|
|
|
2013
|
Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR
(2013)
Global Epigenomic Reconfiguration During Mammalian Brain Development
Science
341(6146):1237905.
|
|
|
2013
|
Schallenberg-Rüdinger M, Kindgren P, Zehrmann A, Small I, Knoop V
(2013)
A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype.
The Plant Journal
76(3):420-432.
|
|
|
2013
|
Waters MT, Smith SM
(2013)
KAI2- and MAX2-mediated responses to karrikins and strigolactones are largely independent of HY5 in Arabidopsis seedlings.
Molecular Plant
6(1):63-75.
|
|
|
2013
|
Flematti GR, Waters MT, Scaffidi A, Merritt DJ, Ghisalberti EL, Dixon KW, Smith SM
(2013)
Karrikin and cyanohydrin smoke signals provide clues to new endogenous plant signaling compounds.
Molecular Plant
6(1):29-37.
|
|
|
2013
|
Stanga JP, Smith SM, Briggs WR, Nelson DC
(2013)
SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and seedling development in Arabidopsis.
Plant Physiology
163(1):318-30.
|
|
|
2013
|
Scaffidi A, Waters MT, Ghisalberti EL, Dixon KW, Flematti GR, Smith SM
(2013)
Carlactone-independent seedling morphogenesis in Arabidopsis.
The Plant Journal
76(1):1-9.
|
|
|
2013
|
Bussell JD, Keech O, Fenske R, Smith SM
(2013)
Requirement for the plastidial oxidative pentose phosphate pathway for nitrate assimilation in Arabidopsis.
The Plant Journal
75(4):578-91.
|
|
|
2013
|
Waters MT, Scaffidi A, Flematti GR, Smith SM
(2013)
The origins and mechanisms of karrikin signalling.
Current Opinion in Plant Biology
16(5):667-73.
|
|
|
2013
|
Eroglu E, Zang W, Eggers PK, Chen X, Boulos RA, Wahid MH, Smith SM, Raston CL
(2013)
Nitrate uptake by p-phosphonic acid calix[8]arene stabilized graphene.
Chemical communications (Cambridge, England)
49(74):8172-4.
|
|
|
2013
|
Eroglu E, Chen X, Bradshaw M, Agarwal V, Zou J, Stewart SG, Duan X, Lamb RN, Smith SM, Raston CL, Iyer KS
(2013)
Biogenic production of palladium nanocrystals using microalgae and their immobilization on chitosan nanofibers for catalytic applications
RSC Advances
3:1009-1012.
|
|
|
2013
|
Wahid MH, Eroglu E, Chen X, Smith SM, Raston CL
(2013)
Functional multi-layer graphene-algae hybrid material formed using vortex fluidics
Green Chemistry
15:650-655.
|
|
|
2013
|
Eroglu E, D'Alonzo NJ, Smith SM, Raston CL
(2013)
Vortex fluidic entrapment of functional microalgal cells in a magnetic polymer matrix.
Nanoscale
5(7):2627-31.
|
|
|
2013
|
Wahid MH, Eroglu E, Chen X, Smith SM, Raston CL
(2013)
Entrapment of Chlorella vulgaris cells within graphene oxide layers
RSC Advances
3, 8180-8183.
|
|
|
2013
|
Funnekotter B, Kaczmarczyk A, Turner SR, Bunn E, Zhou W, Smith SM, Flematti G, Mancera RL
(2013)
Acclimation-induced changes in cell membrane composition and influence on cryotolerance of in vitro shoots of native plant species
Plant Cell, Tissue and Organ Culture
114:83–96.
|
|
|
2013
|
Xu L, Law SR, Murcha MW, Whelan J, Carrie C
(2013)
The dual targeting ability of type II NAD(P)H dehydrogenases arose early in land plant evolution.
BMC Plant Biology
13:100.
|
|
|
2013
|
Carrie C, Whelan J
(2013)
Widespread dual targeting of proteins in land plants: when, where, how and why.
Plant Signaling and Behavior
8(8):.
|
|
|
2013
|
Jung HS, Crisp PA, Estavillo GM, Cole B, Hong F, Mockler TC, Pogson BJ, Chory J
(2013)
Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
Proceedings of the National Academy of Sciences of the United States of America
110(35):14474-9.
|
|
|
2013
|
Albrecht-Borth V, Kauss D, Fan D, Hu Y, Collinge D, Marri S, Liebers M, Apel K, Pfannschmidt T, Chow WS, Pogson BJ
(2013)
A novel proteinase, SNOWY COTYLEDON4, is required for photosynthetic acclimation to higher light intensities in Arabidopsis.
Plant Physiology
163(2):732-45.
|
|
|
2013
|
Cazzonelli CI, Vanstraelen M, Simon S, Yin K, Carron-Arthur A, Nisar N, Tarle G, Cuttriss AJ, Searle IR, Benkova E, Mathesius U, Masle J, Friml J, Pogson BJ
(2013)
Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development.
PLoS ONE
8(7):e70069.
|
|
|
2013
|
Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E
(2013)
A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis.
The Plant Cell
25(9):3450-71.
|
|
|
2013
|
De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, Van De Cotte B, Jaspers P, Van De Peer Y, Kangasjärvi J, Whelan J, Van Breusegem F
(2013)
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.
The Plant Cell
25(9):3472-90.
|
|
|
2013
|
Huang S, Millar AH
(2013)
Succinate dehydrogenase: the complex roles of a simple enzyme.
Current Opinion in Plant Biology
Jun;16(3):344-9.
|
|
|
2013
|
Nelson CJ, Li L, Jacoby RP, Millar AH
(2013)
Degradation rate of mitochondrial proteins in Arabidopsis thaliana cells.
J. Proteome Research
12(7):3449-59.
|
|
|
2013
|
Sew YS, Ströher E, Holzmann C, Huang S, Taylor NL, Jordana X, Millar AH
(2013)
Multiplex micro-respiratory measurements of Arabidopsis tissues.
The New phytologist
200(3):922-932.
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2013
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Jacoby RP, Millar AH, Taylor NL
(2013)
Investigating the role of respiration in plant salinity tolerance by analyzing mitochondrial proteomes from wheat and a salinity-tolerant Amphiploid (wheat × Lophopyrum elongatum).
J. Proteome Research
12(11):4807-29.
|
|
|
2013
|
Kmiec B, Teixeira PF, Berntsson RP, Murcha MW, Branca RM, Radomiljac JD, Regberg J, Svensson LM, Bakali A, Langel U, Lehtiö J, Whelan J, Stenmark P, Glaser E
(2013)
Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts.
Proceedings of the National Academy of Sciences of the United States of America
110(40):E3761-9.
|
|
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2013
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Wang T, Liu J, Shen L, Tonti-Filippini J, Zhu Y, Jia H, Lister R, Ecker J, Millar AH, Ren B, Wang W
(2013)
STAR: An Integrated Solution to Management and Visualization of Sequencing Data.
Bioinformatics
29(24):3204-10.
|
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2013
|
Zareie R, Eubel H, Millar AH, Baer B
(2013)
Long-term survival of high quality sperm: insights into the sperm proteome of the honeybee Apis mellifera.
J. Proteome Research
12(11):5180-8.
|
|
|
2013
|
Secco D, Jabnoune M, Walker H, Shou H, Wu P, Poirier Y, Whelan J
(2013)
Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery.
The Plant Cell
25(11):4285-304.
|
|
|
2013
|
Sundberg M, Pfister B, Fulton D, Bischof S, Delatte T, Eicke S, Stettler M, Smith SM, Streb S, Zeeman SC
(2013)
The heteromultimeric debranching enzyme involved in starch synthesis in Arabidopsis requires both isoamylase1 and isoamylase2 subunits for complex stability and activity.
PLoS ONE
8(9):e75223.
|
|
|
2013
|
Eroglu E, Paul K, Eggers PK, Winslade M, Smith SM, Raston CL
(2013)
Enhanced accumulation of microalgal pigments using metal nanoparticle solutions as light filtering devices
Green Chemistry
15, 3155-3159.
|
|
|
2013
|
Eroglu E, Timmins M, Smith SM
(2013)
Green Hydrogen: Algal Biohydrogen Production
Natural and Artificial Photosynthesis: Solar Power as an Energy Source
267-284.
|
|
|
2013
|
Purdy SJ, Bussell JD, Nunn CP, Smith SM
(2013)
Leaves of the Arabidopsis maltose exporter1 mutant exhibit a metabolic profile with features of cold acclimation in the warm.
PLoS ONE
8(11):e79412.
|
|
|
2013
|
Liu S, Melonek J, Boykin LM, Small I, Howell KA
(2013)
PPR-SMRs: ancient proteins with enigmatic functions.
RNA Biology
10(9):1501-10.
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|
|
2013
|
Boykin LM, Bell CD, Evans G, Small I, De Barro P
(2013)
Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)? Dating, diversification and biogeographic evidence revealed
BMC Evolutionary Biology
13:228.
|
|
|
2013
|
Smith SM
(2013)
Plant biology: Witchcraft and destruction.
Nature
504(7480):384-5.
|
|
|
2013
|
Tanz SK, Castleden I, Small ID, Millar AH
(2013)
Fluorescent protein tagging as a tool to define the subcellular distribution of proteins in plants.
Frontiers in Plant Science
4:214.
|
|
|
2013
|
Takahashi S, Yoshioka-Nishimura M, Nanba D, Badger MR
(2013)
Thermal acclimation of the symbiotic alga Symbiodinium spp. alleviates photobleaching under heat stress.
Plant Physiology
161(1):477-85.
|
|
|
2013
|
Pou A, Medrano H, Flexas J, Tyerman SD
(2013)
A putative role for TIP and PIP aquaporins in dynamics of leaf hydraulic and stomatal conductances in grapevine under water stress and re-watering.
Plant, Cell & Environment
36(4):828-43.
|
|
|
2013
|
Carroll AJ
(2013)
The Arabidopsis Cytosolic Ribosomal Proteome: From form to Function.
Frontiers in Plant Science
4:32.
|
|
|
2013
|
Narsai R, Devenish J, Castleden I, Narsai K, Xu L, Shou H, Whelan J
(2013)
Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis.
The Plant Journal
76(6):1057-73.
|
|
|
2013
|
Small ID, Rackham O, Filipovska A
(2013)
Organelle transcriptomes: products of a deconstructed genome.
Current Opinion in Microbiology
16(5):652-8.
|
|
|
2013
|
Boykin LM
(2013)
Bemisia tabaci nomenclature: lessons learned.
Pest Management Science
70(10):1454-9.
|
|
|
2013
|
Lashkari M, Manzari S, Sahragard A, Malagnini V, Boykin LM, Hosseini R
(2013)
Global genetic variation in the Asian citrus psyllid, Diaphorina citri (Hemiptera: Liviidae) and the endosymbiont Wolbachia: links between Iran and the USA detected.
Pest Management Science
70(7):1033-40.
|
|
|
2013
|
Dosselli R, Tampieri C, Ruiz-Gonzales R, De Munari S, Ragàs X, Sànchez-Garcìa D, Agut M, Nonell S, Reddi E, Gobbo M
(2013)
Synthesis, characterization, and photoinduced antibacterial activity of porphyrin-type photosensitizers conjugated to the antimicrobial peptide Apidaecin 1b.
Journal of Medicinal Chemistry
56(3)1052–1063.
|
|
|
2013
|
Gasparini C, Devigili A, Dosselli R, Pilastro A
(2013)
Pattern of inbreeding depression, condition dependance, and additive genetic variance in Trinidadian guppy ejaculates traits.
Ecology and Evolution
3.
|
|
|
2013
|
Mugford ST, Louveau T, Melton R, Qi XQ, Bakht S, Hill L, Tsurushima T, Honkanen S, Rosser SJ, Lomonossof GP, Osbourn A
(2013)
Modularity of plant metabolic gene clusters: a trio of linked genes that are collectively required for acylation of triterpenes in oat.
The Plant Cell
25(3):1078-92.
|
|
|
2013
|
Berkowitz O, Jost R, Kollehn DO, Fenske R, Finnegan PM, O'Brien PA, Hardy GE, Lambers H
(2013)
Acclimation responses of Arabidopsis thaliana to sustained phosphite treatments.
Journal of Experimental Botany
64(6):1731-43.
|
|
|
2013
|
Oliva M, Farcot E, Vernoux T
(2013)
Plant hormone signaling during development: insights from computational models
Current Opinion in Plant Biology
16(1):19-24.
|
|
|
2012
|
Tanz SK, Kilian J, Johnsson C, Apel K, Small I, Harter K, Wanke D, Pogson B, Albrecht V
(2012)
The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LHCB1 chlorophyll a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings.
The Plant Journal
69(5):743-54.
|
|
|
2012
|
Qi Y, Armbruster U, Schmitz-Linneweber C, Delannoy E, De Longevialle AF, Rühle T, Small I, Jahns P, Leister D
(2012)
Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts.
Journal of Experimental Botany
63(3):1251-70.
|
|
|
2012
|
Colas des Francs-Small C, Kroeger T, Zmudjak M, Ostersetzer-Biran O, Rahimi N, Small I, Barkan A
(2012)
A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria
The Plant Journal
Mar;69(6):996-1005.
|
|
|
2012
|
Giraud E, Ivanova A, Gordon CS, Whelan J, Considine MJ
(2012)
Sulphur dioxide evokes a large scale reprogramming of the grape berry transcriptome associated with oxidative signalling and biotic defence responses.
Plant, cell & environment
35(2):405-17.
|
|
|
2012
|
Giraud E, Van Aken O, Uggalla V, Whelan J
(2012)
REDOX regulation of mitochondrial function in plants.
Plant, cell & environment
35(2):271-80.
|
|
|
2012
|
Velten J, Cakir C, Youn E, Chen J, Cazzonelli CI
(2012)
Transgene silencing and transgene-derived siRNA production in tobacco plants homozygous for an introduced AtMYB90 construct.
PLoS ONE
7(2):e30141.
|
|
|
2012
|
Conn SJ, Berninger P, Broadley MR, Gilliham M
(2012)
Exploiting natural variation to uncover candidate genes that control element accumulation in Arabidopsis thaliana
The New phytologist
193(4):859-866.
|
|
|
2012
|
Buxton L, Takahashi S, Hill R, Ralph PJ
(2012)
VARIABILITY IN THE PRIMARY SITE OF PHOTOSYNTHETIC DAMAGE IN SYMBIODINIUM SP (DINOPHYCEAE) EXPOSED TO THERMAL STRESS
Journal of Phycology
48(1):117-126.
|
|
|
2012
|
Williams C, Van Den Berg M, Panjikar S, Stanley WA, Distel B, Wilmanns M
(2012)
Insights into ubiquitin-conjugating enzyme/ co-activator interactions from the structure of the Pex4p:Pex22p complex.
Embo Journal
31(2):391-402.
|
|
|
2012
|
Keren I, Tal L, Colas des Francs-Small C, Araújo W, Shevtsov S, Shaya F, Fernie A, Small I, Ostersetzer-Biran O
(2012)
nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function.
The Plant Journal
71(3):413-426.
|
|
|
2012
|
Law SR, Narsai R, Taylor NL, Delannoy E, Carrie C, Giraud E, Millar AH, Small I, Whelan J
(2012)
Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination.
Plant Physiology
158(4):1610-27.
|
|
|
2012
|
Lee CP, Eubel H, Solheim C, Millar AH
(2012)
Mitochondrial proteome heterogeneity between tissues from the vegetative and reproductive stages of Arabidopsis thaliana development.
J. Proteome Research
11(6):3326-43.
|
|
|
2012
|
Sun F, Suen PK, Zhang Y, Liang C, Carrie C, Whelan J, Ward JL, Hawkins ND, Jiang L, Lim BL
(2012)
A dual-targeted purple acid phosphatase in Arabidopsis thaliana moderates carbon metabolism and its overexpression leads to faster plant growth and higher seed yield.
The New phytologist
194(1):206-219.
|
|
|
2012
|
Li L, Nelson CJ, Solheim C, Whelan J, Millar AH
(2012)
Determining degradation and synthesis rates of arabidopsis proteins using the kinetics of progressive 15N labeling of two-dimensional gel-separated protein spots.
Molecular and Cellular Proteomics
11(6):M111.010025.
|
|
|
2012
|
Secco D, Wang C, Shou H, Whelan J
(2012)
Phosphate homeostasis in the yeast Saccharomyces cerevisiae, the key role of the SPX domain-containing proteins.
FEBS Letters
586(4):289-95.
|
|
|
2012
|
Secco D, Wang C, Arpat BA, Wang Z, Poirier Y, Tyerman SD, Wu P, Shou H, Whelan J
(2012)
The emerging importance of the SPX domain-containing proteins in phosphate homeostasis.
The New phytologist
193(4):842-51.
|
|
|
2012
|
Roston RL, Gao J, Murcha MW, Whelan J, Benning C
(2012)
TGD1, -2, and -3 Proteins Involved in Lipid Trafficking Form ATP-binding Cassette (ABC) Transporter with Multiple Substrate-binding Proteins
The Journal of Biological Chemistry
287:21406-21415.
|
|
|
2012
|
Li L, Carrie C, Nelson C, Whelan J, Millar AH
(2012)
Accumulation of newly synthesized F1 in vivo in arabidopsis mitochondria provides evidence for modular assembly of the plant F1Fo ATP synthase.
The Journal of Biological Chemistry
287(31):25749-57.
|
|
|
2012
|
Wang Y, Carrie C, Giraud E, Elhafez D, Narsai R, Duncan O, Whelan J, Murcha MW
(2012)
Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17:23 complex in Arabidopsis links mitochondrial activity and biogenesis.
The Plant Cell
24(6):2675-95.
|
|
|
2012
|
Sun F, Carrie C, Law S, Murcha MW, Zhang R, Law YS, Suen PK, Whelan J, Lim BL
(2012)
AtPAP2 is a tail-anchored protein in the outer membrane of chloroplasts and mitochondria.
Plant Signaling and Behavior
7(8):927-32.
|
|
|
2012
|
Wang C, Huang W, Ying Y, Li S, Secco D, Tyerman S, Whelan J, Shou H
(2012)
Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves.
The New phytologist
196(1):139-148.
|
|
|
2012
|
Tian J, Wang C, Zhang Q, He X, Whelan J, Shou H
(2012)
Overexpression of OsPAP10a, A Root-Associated Acid Phosphatase, Increased Extracellular Organic Phosphorus Utilization in Rice.
Journal of Integrative Plant Biology
54(9):631-9.
|
|
|
2012
|
Kmiec B, Glaser E, Duncan O, Whelan J, Murcha MW
(2012)
Evolution of protein import pathways. In Mitochondrial genome Evolution
Advances in Botanical Research (Book)
63:315-346 ISBN: 978-0-12-394279-1.
|
|
|
2012
|
Tan YF, Millar AH, Taylor NL
(2012)
Components of mitochondrial oxidative phosphorylation vary in abundance following exposure to cold and chemical stresses.
J. Proteome Research
11(7):3860-79.
|
|
|
2012
|
Poth AG Mylne JS, Grassl J, Lyons RE, Millar AH, Colgrave ML, Craik DJ
(2012)
Cyclotides associate with leaf vasculature and are the products of a novel precursor in Petunia (Solanaceae)
The Journal of Biological Chemistry
287(32):27033-46.
|
|
|
2012
|
Davies SM, Lopez Sanchez MI, Narsai R, Shearwood AM, Razif MF, Small ID, Whelan J, Rackham O, Filipovska A
(2012)
MRPS27 is a pentatricopeptide repeat domain protein required for the translation of mitochondrially encoded proteins.
FEBS Letters
586(20):3555-61.
|
|
|
2012
|
Dowen RH, Pelizzola M, Schmitz RJ, Lister R, Dowen JM, Nery JR, Dixon JE, Ecker JR
(2012)
Widespread dynamic DNA methylation in response to biotic stress.
Proceedings of the National Academy of Sciences of the United States of America
109(32):E2183-91.
|
|
|
2012
|
Ströher E, Millar AH
(2012)
The biological roles of glutaredoxins.
Biochemical Journal
446(3):333-48.
|
|
|
2012
|
Baer B, Zareie R, Paynter E, Poland V, Millar AH
(2012)
Seminal fluid proteins differ in abundance between genetic lineages of honeybees.
Journal of Proteomics
75(18):5646-53.
|
|
|
2012
|
Barkan A, Rojas M, Fujii S, Yap A, Chong YS, Bond CS, Small I
(2012)
A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.
PLOS Genetics
8(8):e1002910.
|
|
|
2012
|
Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, Svozil J, Wuyts N, Stitt M, Hilson P, Granier C, Gruissem W
(2012)
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit.
Molecular Systems Biology
8:606.
|
|
|
2012
|
Kim M, Lee U, Small I, Colas des Francs-Small C, Vierling E
(2012)
Mutations in a mitochondrial transcription termination factor (mTERF)-related protein enhance thermotolerance in the absence of the major molecular chaperone HSP101
The Plant Cell
24(8):3349-65.
|
|
|
2012
|
Boussardon C, Salone V, Avon A, Berthomé R, Hammani K, Okuda K, Shikanai T, Small I, Lurin C
(2012)
Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids.
The Plant Cell
24(9):3684-94.
|
|
|
2012
|
Jacoby RP, Li L, Huang S, Pong Lee C, Millar AH, Taylor NL
(2012)
Mitochondrial composition, function and stress response in plants.
Journal of Integrative Plant Biology
54(11):887-906.
|
|
|
2012
|
Solheim C, Li L, Hatzopoulos P, Millar AH
(2012)
Loss of Lon1 in Arabidopsis changes the mitochondrial proteome leading to altered metabolite profiles and growth retardation without an accumulation of oxidative damage
Plant Physiology
160(3):1187-203.
|
|
|
2012
|
Grassl J, Pružinská A, Hörtensteiner S, Taylor NL, Millar AH
(2012)
Early events in plastid protein degradation in stay-green Arabidopsis reveal differential regulation beyond the retention of LHCII and chlorophyll
J. Proteome Research
11(11):5443-52.
|
|
|
2012
|
Williams M, Lean M, Pogson B, Martin C
(2012)
Plants, food and human health: You are what you eat?
The Plant Cell
24(4).
|
|
|
2012
|
Gruissem W, Lee C-H, Oliver M, Pogson B
(2012)
The Global Plant Council: Increasing the impact of plant research to meet global challenges
Journal of Plant Biology
55:343-348.
|
|
|
2012
|
Zhang B, Carrie C, Ivanova A, Narsai R, Murcha MW, Duncan O, Wang Y, Law SR, Albrecht V, Pogson B, Giraud E, Van Aken O, Whelan J
(2012)
LETM proteins play a role in the accumulation of mitochondrially encoded proteins in Arabidopsis thaliana and AtLETM2 displays parent of origin effects.
The Journal of Biological Chemistry
287(50):41757-73.
|
|
|
2012
|
Matsubara S, Förster B, Waterman M, Robinson SA, Pogson BJ, Gunning B, Osmond CB
(2012)
From ecophysiology to phenomics: some implications of photoprotection and shade-sun acclimation in situ for dynamics of thylakoids in vitro
Philos. Trans. R. Soc. B-Biol. Sci.
367(1608):3503.
|
|
|
2012
|
Wiszniewski AA, Smith SM, Bussell JD
(2012)
Conservation of two lineages of peroxisomal (Type I) 3-ketoacyl-CoA thiolases in land plants, specialization of the genes in Brassicaceae, and characterization of their expression in Arabidopsis thaliana.
Journal of Experimental Botany
63(17):6093-103.
|
|
|
2012
|
Eroglu E, Agarwal V, Bradshaw M, Chen XJ, Smith SM, Raston CL, Iyer KS
(2012)
Nitrate removal from liquid effluents using microalgae immobilized on chitosan nanofiber mats
Green Chemistry
14:2682-2685.
|
|
|
2012
|
Waters MT, Scaffidi A, Flematti GR, Smith SM
(2012)
Karrikins force a rethink of strigolactone mode of action.
Plant Signaling and Behavior
7(8):969-72.
|
|
|
2012
|
Scaffidi A, Waters MT, Bond CS, Dixon KW, Smith SM, Ghisalberti EL, Flematti GR
(2012)
Exploring the molecular mechanism of karrikins and strigolactones.
Bioorganic & Medicinal Chemistry
22(11):3743-6.
|
|
|
2012
|
Scaffidi A, Waters MT, Skelton BW, Bond CS, Sobolev AN, Bythell-Douglas R, Mckinley AJ, Dixon KW, Ghisalberti EL, Smith SM, Flematti GR
(2012)
Solar irradiation of the seed germination stimulant karrikinolide produces two novel head-to-head cage dimers.
Organic & Biomolecular Chemistry
10(20):4069-73.
|
|
|
2012
|
Smith SM, Waters MT
(2012)
Strigolactones: destruction-dependent perception?
Current Biology
22(21):R924-7.
|
|
|
2012
|
Waters MT, Brewer PB, Bussell JD, Smith SM, Beveridge CA
(2012)
The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones.
Plant Physiology
159(3):1073-85.
|
|
|
2012
|
Waters MT, Nelson DC, Scaffidi A, Flematti GR, Sun YK, Dixon KW, Smith SM
(2012)
Specialisation within the DWARF14 protein family confers distinct responses to karrikins and strigolactones in Arabidopsis.
Development
139(7):1285-95.
|
|
|
2012
|
Nelson DC, Flematti GR, Ghisalberti EL, Dixon KW, Smith SM
(2012)
Regulation of seed germination and seedling growth by chemical signals from burning vegetation.
Annual Review of Plant Biology
63:107-30.
|
|
|
2012
|
Keech O, Zhou W, Fenske R, Colas-Des-Francs-Small C, Bussell JD, Badger MR, Smith SM
(2012)
The genetic dissection of a short-term response to low CO(2) supports the possibility for peroxide-mediated decarboxylation of photorespiratory intermediates in the peroxisome.
Molecular Plant
5(6):1413-6.
|
|
|
2012
|
Gordon MJ, Carmody M, Albrecht V, Pogson B
(2012)
Systemic and Local Responses to Repeated HL Stress-Induced Retrograde Signaling in Arabidopsis.
Frontiers in Plant Science
3:303.
|
|
|
2012
|
Estavillo GM, Chan KX, Phua SY, Pogson BJ
(2012)
Reconsidering the nature and mode of action of metabolite retrograde signals from the chloroplast.
Frontiers in Plant Science
3:300.
|
|
|
2012
|
Murcha MW, Wang Y, Whelan J
(2012)
A molecular link between mitochondrial preprotein transporters and respiratory chain complexes
Plant Signaling and Behavior
7(12):1594-1597.
|
|
|
2012
|
Nisar N, Verma S, Pogson BJ, Cazzonelli CI
(2012)
Inflorescence stem grafting made easy in Arabidopsis.
Plant Methods
8(1):50.
|
|
|
2012
|
Lee S, Lee DW, Yoo Y-J, Duncan O, Oh Y, Lee Y, Lee G, Whelan J, Hwang I
(2012)
Mitochondrial Targeting of the Arabidopsis F1-ATPase γ-Subunit via Multiple Compensatory and Synergistic Presequence Motifs
The Plant Cell
24(12):5037-57.
|
|
|
2012
|
Van Aken O, Whelan J
(2012)
Comparison of transcriptional changes to chloroplast and mitochondrial perturbations reveals common and specific responses in Arabidopsis
Frontiers in Plant Science
3:281.
|
|
|
2012
|
Munns R, James RA, Xu B, Athman A, Conn SJ, Jordans C, Byrt CS, Hare RA, Tyerman SD, Tester M, Plett D, Gilliham M
(2012)
Wheat grain yield on saline soils is improved by an ancestral Na⁺ transporter gene.
Nature Biotechnology
Mar 11;30(4):360-4.
|
|
|
2012
|
Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Rowley MJ, Gregory BD, Ecker JR, Tang H, Pikaard CS
(2012)
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.
Genes & Development
Aug 15;26(16):1825-36.
|
|
|
2012
|
Dosselli R, Millioni R, Puricelli L, Tessari P, Arrigoni G, Franchin C, Segalla A, Teardo E, Reddi E
(2012)
Molecular targets of antimicrobial photodynamic therapy identified by a proteomic approach.
Journal of Proteomics
77:329-43.
|
|
|
2012
|
Kang S, Khan AL, Hussain J, Ali L, Kamran M, Waqas M, Lee I
(2012)
Rhizonin A from Burkholderia sp. KCTC11096 and Its Growth Promoting Role in Lettuce Seed Germination
Molecules
17(7):7980-7988.
|
|
|
2012
|
Waqas M, Khan AL, Kamran M, Hamayun M, Kang S, Kim Y, Lee IJ
(2012)
Endophytic fungi produce gibberellins and indoleacetic acid and promotes host-plant growth during stress.
Molecules
17(9):10754-73.
|
|
|
2012
|
Niedzwiedzki DM, Bina D, Picken N, Honkanen S, Blankenship RE, Holten D, Cogdell R
(2012)
Spectroscopic studies of two spectral variants of light-harvesting complex 2 (LH2) from the photosynthetic purple sulfur bacterium Allochromatium vinosum.
Biochimica et Biophysica Acta - Bioenergetics
1817(9):1576-87.
|
|
|
2012
|
Brunoud G, Wells DM, Oliva M, Larrieu A, Mirabet V, Burrow AH, Beeckman T, Kepinski S, Traas J, Bennett MJ, Vernoux T
(2012)
A novel sensor to map auxin response and distribution at high spatio-temporal resolution.
Nature
482(7383):103-6.
|
|
|
2012
|
Band LR, Wells DM, Larrieu A, Sun J, Middleton AM, French AP, Brunoud G, Sato EM, Wilson MH, Péret B, Oliva M, Swarup R, Sairanen I, Parry G, Ljung K, Beeckman T, Garibaldi JM, Estelle M, Owen MR, Vissenberg K, Hodgman TC, Pridmore TP, King JR, Vernoux T, Bennett MJ
(2012)
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism
Proceedings of the National Academy of Sciences of the United States of America
109(12):4668-73.
|
|
|
2011
|
Taurines R, Dudley E, Grassl J, Warnke A, Gerlach M, Coogan AN, Thome J
(2011)
Proteomic research in psychiatry.
Proteomics
25(2):151-96.
|
|
|
2011
|
Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, Kuan S, Edsall LE, Camargo AA, Stevenson BJ, Ecker JR, Bafna V, Strausberg RL, Simpson AJ, Ren B
(2011)
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer.
Genome Research
22(2):246-58.
|
|
|
2011
|
Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A
(2011)
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.
Nature
473(7347):39.
|
|
|
2011
|
Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, Evans RM, Ecker JR
(2011)
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.
Nature
471(7336):68-73.
|
|
|
2011
|
Albrecht V, Estavillo GM, Cuttriss AJ, Pogson BJ
(2011)
Identifying chloroplast biogenesis and signalling mutants in Arabidopsis thaliana.
Methods in Molecular Biology
684:257-72.
|
|
|
2011
|
Wu J, Wang C, Zheng L, Wang L, Chen Y, Whelan J, Shou H
(2011)
Ethylene is involved in the regulation of iron homeostasis in by regulating the expression of iron-acquisition-related genes in <i>Oryza sativa</i>
Journal of Experimental Botany
62(2):667-74.
|
|
|
2011
|
Takahashi S, Badger MR
(2011)
Photoprotection in plants: a new light on photosystem II damage.
Trends in Plant Science
16(1):53-60.
|
|
|
2011
|
Price GD, Badger MR, Von Caemmerer S
(2011)
The prospect of using cyanobacterial bicarbonate transporters to improve leaf photosynthesis in C3 crop plants.
Plant Physiology
155(1):20-6.
|
|
|
2011
|
Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, Van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL
(2011)
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.
Plant Physiology
155(1):259-70.
|
|
|
2011
|
Chateigner-Boutin AL, Small I
(2011)
Organellar RNA editing.
WIREs RNA
2(4):493-506.
|
|
|
2011
|
Purdy SJ, Bussell JD, Nelson DC, Villadsen D, Smith SM
(2011)
A nuclear-localized protein, KOLD SENSITIV-1, affects the expression of cold-responsive genes during prolonged chilling in Arabidopsis.
J. Plant Physiol
168(3):263-9.
|
|
|
2011
|
Fujii S, Bond CS, Small ID
(2011)
Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.
Proceedings of the National Academy of Sciences of the United States of America
108(4):1723-8.
|
|
|
2011
|
Kumari M, Clarke HJ, Colas des Francs-Small C, Small ID, Khan TN, Siddique KHM
(2011)
Albinism does not correlate with biparental inheritance of plastid DNA in interspecific hybrids in Cicer species
Plant Science
180(4):628-33.
|
|
|
2011
|
Chateigner-Boutin AL, Des Francs-Small CC, Delannoy E, Kahlau S, Tanz SK, De Longevialle AF, Fujii S, Small I
(2011)
OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.
The Plant Journal
65(4):532-42.
|
|
|
2011
|
Narsai R, Rocha M, Geigenberger P, Whelan J, Van Dongen JT
(2011)
Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia.
The New phytologist
190(2):472-87.
|
|
|
2011
|
Jia L, Wu Z, Hao X, Carrie C, Zheng L, Whelan J, Wu Y, Wang S, Wu P, Mao C
(2011)
Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa.
The New phytologist
189(3):843-855.
|
|
|
2011
|
Keech O
(2011)
The conserved mobility of mitochondria during leaf senescence reflects differential regulation of the cytoskeletal components in Arabidopsis thaliana.
Plant Signaling and Behavior
6(1):147-50.
|
|
|
2011
|
Taylor NL, Heazlewood JL, Millar AH
(2011)
The Arabidopsis thaliana 2-D gel mitochondrial proteome: Refining the value of reference maps for assessing protein abundance, contaminants and post-translational modifications.
Proteomics
11(9):1720-33.
|
|
|
2011
|
Lee CP, Eubel H, O'Toole N, Millar AH
(2011)
Combining proteomics of root and shoot mitochondria and transcript analysis to define constitutive and variable components in plant mitochondria.
Phytochemistry
72(10):1092-108.
|
|
|
2011
|
Poland V, Eubel H, King M, Solheim C, Harvey Millar A, Baer B
(2011)
Stored sperm differs from ejaculated sperm by proteome alterations associated with energy metabolism in the honeybee Apis mellifera.
Molecular Ecology
20(12):2643-54.
|
|
|
2011
|
Hammani K, Gobert A, Hleibieh K, Choulier L, Small I, Giegé P
(2011)
An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation.
The Plant Cell
23(2):730-40.
|
|
|
2011
|
Huang S, Millar AH, Taylor NL
(2011)
The plant mitochondrial proteome composition and stress response: conservation and divergence between monocots and dicots
Advances in Plant Biology (Book)
1(3):207-239.
|
|
|
2011
|
Delannoy E, Fujii S, Colas Des Francs-Small C, Brundrett M, Small I
(2011)
Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes.
Molecular Biology and Evolution
28(7):2077-86.
|
|
|
2011
|
Hirsch J, Misson J, Crisp PA, David P, Bayle V, Estavillo GM, Javot H, Chiarenza S, Mallory AC, Maizel A, Declerck M, Pogson BJ, Vaucheret H, Crespi M, Desnos T, Thibaud MC, Nussaume L, Marin E
(2011)
A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5'->3' exoribonuclease (XRN) activities in Arabidopsis thaliana roots.
PLoS ONE
6(2):e16724.
|
|
|
2011
|
Woo NS, Gordon MJ, Graham SR, Rossel JB, Badger MR, Pogson BJ
(2011)
A mutation in the purine biosynthetic enzyme ATASE2 impacts high light signalling and acclimation responses in green and chlorotic sectors of Arabidopsis leaves.
Functional Plant Biology
38(5):401-419.
|
|
|
2011
|
Förster B, Pogson BJ, Osmond CB
(2011)
Lutein from de-epoxidation of lutein epoxide replaces zeaxanthin to sustain an enhanced capacity for non-photochemical chlorophyll fluorescence quenching in avocado shade leaves in the dark
Plant Physiology
156(1):393-403.
|
|
|
2011
|
Pogson BJ, Albrecht V
(2011)
Genetic dissection of chloroplast biogenesis and development: an overview.
Plant Physiology
155(4):1545-51.
|
|
|
2011
|
Cuttriss AJ, Cazzonelli CI, Wurtzel ET, Pogson BJ
(2011)
Carotenoids
Advances in Botanical Research (Book)
58:1-36.
|
|
|
2011
|
Hammani K, Gobert A, Small I, Giegé P
(2011)
A PPR protein involved in regulating nuclear genes encoding mitochondrial proteins?
Plant Signaling and Behavior
6(5):748-50.
|
|
|
2011
|
Fujii S, Small I
(2011)
The evolution of RNA editing and pentatricopeptide repeat genes.
The New phytologist
191(1):37-47.
|
|
|
2011
|
Hammani K, Des Francs-Small CC, Takenaka M, Tanz SK, Okuda K, Shikanai T, Brennicke A, Small I
(2011)
The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria.
The Journal of Biological Chemistry
286(24):21361-71.
|
|
|
2011
|
Meyer EH, Solheim C, Tanz SK, Bonnard G, Millar AH
(2011)
Insights into the composition and assembly of the membrane arm of plant complex I through analysis of subcomplexes in Arabidopsis mutant lines.
The Journal of Biological Chemistry
286(29):26081-92.
|
|
|
2011
|
Shingaki-Wells RN, Huang S, Taylor NL, Carroll AJ, Zhou W, Millar AH
(2011)
Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance.
Plant Physiology
156(4):1706-24.
|
|
|
2011
|
Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL
(2011)
Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.
J. Proteome Research
10(4):1571-82.
|
|
|
2011
|
Gleason C, Huang S, Thatcher LF, Foley RC, Anderson CR, Carroll AJ, Millar AH, Singh KB
(2011)
Mitochondrial complex II has a key role in mitochondrial-derived reactive oxygen species influence on plant stress gene regulation and defense.
Proceedings of the National Academy of Sciences of the United States of America
108(26):10768-73.
|
|
|
2011
|
Shingaki-Wells RN, Huang S, Taylor NL, Millar AH
(2011)
Pursuing the identification of O(2) deprivation survival mechanisms in plants related to selective mRNA translation, hormone-independent cellular elongation and preparation for the arrival of oxygen.
Plant Signaling and Behavior
6(10):1612-5.
|
|
|
2011
|
Grassl J, Taylor NL, Millar AH
(2011)
Matrix-assisted laser desorption/ionisation mass spectrometry imaging and its development for plant protein imaging.
Plant Methods
7(1):21.
|
|
|
2011
|
Jacoby RP, Taylor NL, Millar AH
(2011)
The role of mitochondrial respiration in salinity tolerance.
Trends in Plant Science
16(11):614-23.
|
|
|
2011
|
Tanz S, Small ID
(2011)
In silico methods for the identification of organellar and suborganellar targeting peptides in Arabidopsis chloroplast proteins, and for predicting the topology of membrane proteins.
Methods in Molecular Biology
774:243-80.
|
|
|
2011
|
Estavillo GM, Crisp PA, Pornsiriwong W, Wirtz M, Collinge D, Carrie C, Giraud E, Whelan J, David P, Javot H, Brearley C, Hell R, Marin E, Pogson BJ
(2011)
Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis.
The Plant Cell
23(11):3992-4012.
|
|
|
2011
|
Duncan O, Taylor NL, Carrie C, Eubel H, Kubiszewski-Jakubiak S, Zhang B, Narsai R, Millar AH, Whelan J
(2011)
Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis.
Plant Physiology
157(3):1093-113.
|
|
|
2011
|
Narsai R, Law SR, Carrie C, Xu L, Whelan J
(2011)
In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis.
Plant Physiology
157(3):1342-62.
|
|
|
2011
|
Kühn K, Carrie C, Giraud E, Wang Y, Meyer EH, Narsai R, Des Francs-Small CC, Zhang B, Murcha MW, Whelan J
(2011)
The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana.
The Plant Journal
67(6):1067-80.
|
|
|
2011
|
Millar AH, Whelan J, Soole KL, Day DA
(2011)
Organization and regulation of mitochondrial respiration in plants.
Annual Review of Plant Biology
62:79-104.
|
|
|
2011
|
Feher K, Whelan J, Müller S
(2011)
Assessing modularity using a random matrix theory approach.
Statistical Applications in Genetics and Molecular Biology
10(1):.
|
|
|
2011
|
Cousins AB, Walker BJ, Pracharoenwattana I, Smith SM, Badger MR
(2011)
Peroxisomal hydroxypyruvate reductase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release.
Photosynthesis Research
108(2-3):91-100.
|
|
|
2011
|
Yamori W, Takahashi S, Makino A, Price GD, Badger MR, Von Caemmerer S
(2011)
The roles of ATP synthase and the cytochrome b6/f complexes in limiting chloroplast electron transport and determining photosynthetic capacity.
Plant Physiology
155(2):956-62.
|
|
|
2011
|
Waters MT, Smith SM, Nelson DC
(2011)
Smoke signals and seed dormancy: where next for MAX2?
Plant Signaling and Behavior
6(9):1418-22.
|
|
|
2011
|
Flematti GR, Merritt DJ, Piggott MJ, Trengove RD, Smith SM, Dixon KW, Ghisalberti EL
(2011)
Burning vegetation produces cyanohydrins that liberate cyanide and stimulate seed germination.
Nature Communications
2:360.
|
|
|
2011
|
Flematti GR, Scaffidi A, Dixon KW, Smith SM, Ghisalberti EL
(2011)
Production of the seed germination stimulant karrikinolide from combustion of simple carbohydrates.
J. Agriculture and Food Chemistry
59(4):1195-8.
|
|
|
2011
|
Nelson DC, Scaffidi A, Dun EA, Waters MT, Flematti GR, Dixon KW, Beveridge CA, Ghisalberti EL, Smith SM
(2011)
F-box protein MAX2 has dual roles in karrikin and strigolactone signaling in Arabidopsis thaliana.
Proceedings of the National Academy of Sciences of the United States of America
108(21):8897-902.
|
|
|
2011
|
Cazzonelli CI
(2011)
Carotenoids in nature: insights from plants and beyond.
Functional Plant Biology
38(11):833-847.
|
|
|
2011
|
Kindgren P, Kremnev D, Blanco NE, de Dios Barajas López J, Fernández AP, Tellgren-Roth C, Small I, Strand Å
(2011)
The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus
The Plant Journal
70(2):279-91.
|
|
|
2011
|
Fernie AR, Aharoni A, Willmitzer L, Stitt M, Tohge T, Kopka J, Carroll AJ, Saito K, Fraser PD, Deluca V
(2011)
Recommendations for reporting metabolite data.
The Plant Cell
23(7):2477-82.
|
|
|
2011
|
Tohge T, Mettler T, Arrivault S, Carroll AJ, Stitt M, Fernie AR
(2011)
From models to crop species: caveats and solutions for translational metabolomics.
Frontiers in Plant Science
2:61.
|
|
|
2011
|
Tazoe Y, Von Caemmerer S, Estavillo GM, Evans JR
(2011)
Using tunable diode laser spectroscopy to measure carbon isotope discrimination and mesophyll conductance to CO₂ diffusion dynamically at different CO₂ concentrations.
Plant, cell & environment
34(4):580-91.
|
|
|
2011
|
Terenius O, Papanicolaou A, Garbutt JS, Eleftherianos I, Huvenne H, Kanginakudru S, Albrechtsen M, An C, Aymeric JL, Barthel A, Bebas P, Bitra K, Bravo A, Chevalier F, Collinge DP, Crava CM, De Maagd RA, Duvic B, Erlandson M, Faye I, Felföldi G, Fujiwara H, Futahashi R, Gandhe AS, Gatehouse HS, Gatehouse LN, Giebultowicz JM, Gómez I, Grimmelikhuijzen CJ, Groot AT, Hauser F, Heckel DG, Hegedus DD, Hrycaj S, Huang L, Hull JJ, Iatrou K, Iga M, Kanost MR, Kotwica J, Li C, Li J, Liu J, Lundmark M, Matsumoto S, Meyering-Vos M, Millichap PJ, Monteiro A, Mrinal N, Niimi T, Nowara D, Ohnishi A, Oostra V, Ozaki K, Papakonstantinou M, Popadic A, Rajam MV, Saenko S, Simpson RM, Soberón M, Strand MR, Tomita S, Toprak U, Wang P, Wee CW, Whyard S, Zhang W, Nagaraju J, Ffrench-Constant RH, Herrero S, Gordon K, Swevers L, Smagghe G
(2011)
RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design.
Journal of Insect Physiology
57(2):231-45.
|
|
|
2011
|
Barton DA, Cole L, Collings DA, Liu DY, Smith PM, Day DA, Overall RL
(2011)
Cell-to-cell transport via the lumen of the endoplasmic reticulum.
The Plant Journal
66(5):806-17.
|
|
|
2011
|
Smith C, Barthet M, Melino V, Smith P, Day D, Soole K
(2011)
Alterations in the mitochondrial alternative NAD(P)H Dehydrogenase NDB4 lead to changes in mitochondrial electron transport chain composition, plant growth and response to oxidative stress.
Plant and Cell Physiology
52(7):1222-37.
|
|
|
2011
|
Williams CP, Schueller N, Thompson CA, Van Den Berg M, Van Haren SD, Erdmann R, Bond CS, Distel B, Schliebs W, Wilmanns M, Stanley WA
(2011)
The Peroxisomal Targeting Signal 1 in sterol carrier protein 2 is autonomous and essential for receptor recognition.
BMC Biochemistry
12:12.
|
|
|
2011
|
Gilliham M, Athman A, Tyerman SD, Conn SJ
(2011)
Cell-specific compartmentation of mineral nutrients is an essential mechanism for optimal plant productivity--another role for TPC1?
Plant Signaling and Behavior
Nov;6(11):1656-61.
|
|
|
2011
|
Gilliham M, Dayod M, Hocking BJ, Xu B, Conn SJ, Kaiser BN, Leigh RA, Tyerman SD
(2011)
Calcium delivery and storage in plant leaves: exploring the link with water flow.
Journal of Experimental Botany
Apr;62(7):2233-50.
|
|
|
2011
|
Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D, Guédon Y, Armitage L, Picard F, Guyomarc'h S, Cellier C, Parry G, Koumproglou R, Doonan JH, Estelle M, Godin C, Kepinski S, Bennett M, De Veylder L, Traas J
(2011)
The auxin signalling network translates dynamic input into robust patterning at the shoot apex
Molecular Systems Biology
7:508.
|
|
|
2011
|
Couturier J, Ströher E, Albetel AN, Roret T, Muthuramalingam M, Tarrago L, Seidel T, Tsan P, Jacquot JP, Johnson MK, Dietz KJ, Didierjean C, Rouhier N
(2011)
Arabidopsis chloroplastic glutaredoxin C5 as a model to explore molecular determinants for iron-sulfur cluster binding into glutaredoxins.
The Journal of Biological Chemistry
286(31):27515-27.
|
|
|
2010
|
Scaife C, Mowlds P, Grassl J, Polden J, Daly CN, Wynne K, Dunn MJ, Clyne RK
(2010)
2-D DIGE analysis of the budding yeast pH 6-11 proteome in meiosis.
Proteomics
10(24):4401-14.
|
|
|
2010
|
Grassl J, Scaife C, Polden J, Daly CN, Iacovella MG, Dunn MJ, Clyne RK
(2010)
Analysis of the budding yeast pH 4-7 proteome in meiosis.
Proteomics
10(3):506-19.
|
|
|
2010
|
Taurines R, Dudley E, Conner AC, Grassl J, Jans T, Guderian F, Mehler-Wex C, Warnke A, Gerlach M, Thome J
(2010)
Serum protein profiling and proteomics in autistic spectrum disorder using magnetic bead-assisted mass spectrometry.
Proteomics
260(3):249-55.
|
|
|
2010
|
Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF
(2010)
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
Nature Biotechnology
28(10):1026-1028.
|
|
|
2010
|
Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, Ruotti V, Wang W, Stewart R, Thomson JA, Ecker JR, Ren B
(2010)
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.
Cell Stem Cell
7;6(5):479-91.
|
|
|
2010
|
Cazzonelli CI, Roberts AC, Carmody ME, Pogson BJ
(2010)
Transcriptional control of SET DOMAIN GROUP 8 and CAROTENOID ISOMERASE during Arabidopsis development.
Molecular Plant
3(1):174-91.
|
|
|
2010
|
Okuda K, Hammani K, Tanz SK, Peng L, Fukao Y, Myouga F, Motohashi R, Shinozaki K, Small I, Shikanai T
(2010)
The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts.
The Plant Journal
61(2):339-49.
|
|
|
2010
|
Huang S, Taylor NL, Narsai R, Eubel H, Whelan J, Millar AH
(2010)
Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme.
Plant Molecular Biology
72(3):331-42.
|
|
|
2010
|
Chateigner-Boutin AL, Small I
(2010)
Plant RNA editing.
RNA Biology
7(2):213-9.
|
|
|
2010
|
Chai TT, Simmonds D, Day DA, Colmer TD, Finnegan PM
(2010)
Photosynthetic performance and fertility are repressed in GmAOX2b antisense soybean.
Plant Physiology
152(3):1638-49.
|
|
|
2010
|
David P, Colas des Francs-Small C, Sévignac M, Thareau V, Macadré C, Langin T, Geffroy V
(2010)
Three highly similar formate dehydrogenase genes located in the vicinity of the B4 resistance gene cluster are differentially expressed under biotic and abiotic stresses in <i>Phaseolus vulgaris</i>
Theoretical and Applied Genetics
121(1):87-103.
|
|
|
2010
|
Tan YF, O'Toole N, Taylor NL, Millar AH
(2010)
Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function.
Plant Physiology
152(2):747-61.
|
|
|
2010
|
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW
(2010)
Hypoxia responsive MicroRNAs and trans-acting small interfering RNAs
Journal of Experimental Botany
61(1):165-77.
|
|
|
2010
|
Den Boer SPA, Baer BC, Boomsma JJ
(2010)
Seminal fluid mediates ejaculate competition in social insects
Science
327(5972):1506-9.
|
|
|
2010
|
Cazzonelli CI, Pogson BJ
(2010)
Source to sink: regulation of carotenoid biosynthesis in plants.
Trends in Plant Science
15(5):266-74.
|
|
|
2010
|
Velten J, Cakir C, Cazzonelli CI
(2010)
A spontaneous dominant-negative mutation within a 35S::AtMYB90 transgene inhibits flower pigment production in tobacco.
PLoS ONE
5(3):e9917.
|
|
|
2010
|
Chen W, Chi Y, Taylor NL, Lambers H, Finnegan PM
(2010)
Disruption of <i>ptLPD1</i> or <i>ptLPD2</i>, genes that encode isoforms of the plastidial lipoamide dehydrogenase, confers arsenate hypersensitivity in <i>Arabidopsis thaliana</i>
Plant Physiology
153(3):1385-97.
|
|
|
2010
|
Atkin O, Millar AH, Turnbull M
(2010)
Plant respiration in a changing world
The New phytologist
187(2):268-72.
|
|
|
2010
|
Lee CP, Eubel H, Millar AH
(2010)
Diurnal changes in mitochondrial function reveal daily optimization of light and dark respiratory metabolism in Arabidopsis.
Molecular and Cellular Proteomics
9(10):2125-39.
|
|
|
2010
|
Carroll AJ, Badger MR, Millar AH
(2010)
The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets.
BMC Bioinformatics
11:376.
|
|
|
2010
|
Falcon de Longevialle AF, Small ID, Lurin C
(2010)
Nuclearly Encoded Splicing Factors Implicated in RNA Splicing in Higher Plant Organelles
Molecular Plant
3(4):691-705.
|
|
|
2010
|
Koprivova A, Colas des Francs-Small C, Calder G, Mugford ST, Tanz SK, Lee BR, Zechmann B, Small ID, Kopriva S
(2010)
Identification of a pentatricopeptide repeat protein implicated in splicing of intron 1 of mitochondrial nad7 transcripts
The Journal of Biological Chemistry
285(42):32192-9.
|
|
|
2010
|
Taylor NL, Howell KA, Heazlewood JL, Tan TY, Narsai R, Huang S, Whelan J, Millar AH
(2010)
Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation of a basic amino acid carrier involved in arginine metabolism during seed germination.
Plant Physiology
154(2):691-704.
|
|
|
2010
|
Tomaz T, Bagard M, Pracharoenwattana I, Lindén P, Lee CP, Carroll AJ, Ströher E, Smith SM, Gardeström P, Millar AH
(2010)
Mitochondrial malate dehydrogenase lowers leaf respiration and alters photorespiration and plant growth in Arabidopsis.
Plant Physiology
154(3):1143-57.
|
|
|
2010
|
Keech O, Pesquet E, Gutierrez L, Ahad A, Bellini C, Smith SM, Gardeström P
(2010)
Leaf senescence is accompanied by an early disruption of the microtubule network in Arabidopsis.
Plant Physiology
154(4):1710-20.
|
|
|
2010
|
Flematti GR, Scaffidi A, Goddard-Borger ED, Heath CH, Nelson DC, Commander LE, Stick RV, Dixon KW, Smith SM, Ghisalberti EL
(2010)
Structure-activity relationship of karrikin germination stimulants.
J. Agriculture and Food Chemistry
58(15):8612-7.
|
|
|
2010
|
Pracharoenwattana I, Zhou W, Keech O, Francisco PB, Udomchalothorn T, Tschoep H, Stitt M, Gibon Y, Smith SM
(2010)
Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen.
The Plant Journal
62(5):785-95.
|
|
|
2010
|
Francisco P, Li J, Smith SM
(2010)
The gene encoding the catalytically inactive beta-amylase BAM4 involved in starch breakdown in Arabidopsis leaves is expressed preferentially in vascular tissues in source and sink organs.
J. Plant Physiol
167(11):890-5.
|
|
|
2010
|
Pracharoenwattana I, Zhou W, Smith SM
(2010)
Fatty acid beta-oxidation in germinating Arabidopsis seeds is supported by peroxisomal hydroxypyruvate reductase when malate dehydrogenase is absent.
Plant Molecular Biology
72(1-2):101-9.
|
|
|
2010
|
Che P, Bussell JD, Zhou W, Estavillo GM, Pogson BJ, Smith SM
(2010)
Signaling from the endoplasmic reticulum activates brassinosteroid signaling and promotes acclimation to stress in Arabidopsis.
Science Signaling
3(141):ra69.
|
|
|
2010
|
Nelson DC, Flematti GR, Riseborough JA, Ghisalberti EL, Dixon KW, Smith SM
(2010)
Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana.
Proceedings of the National Academy of Sciences of the United States of America
107(15):7095-100.
|
|
|
2010
|
Mubarakshina MM, Ivanov BN, Naydov IA, Hillier W, Badger MR, Krieger-Liszkay A
(2010)
Production and diffusion of chloroplastic H2O2 and its implication to signalling.
Journal of Experimental Botany
61(13):3577-87.
|
|
|
2010
|
Cousins AB, Ghannoum O, Von Caemmerer S, Badger MR
(2010)
Simultaneous determination of Rubisco carboxylase and oxygenase kinetic parameters in Triticum aestivum and Zea mays using membrane inlet mass spectrometry.
Plant, cell & environment
33(3):444-52.
|
|
|
2010
|
Takahashi S, Milward SE, Yamori W, Evans JR, Hillier W, Badger MR
(2010)
The solar action spectrum of photosystem II damage.
Plant Physiology
153(3):988-93.
|
|
|
2010
|
Jacoby RP, Millar AH, Taylor NL
(2010)
Wheat mitochondrial proteomes provide new links between antioxidant defense and plant salinity tolerance.
J. Proteome Research
9(12):6595-604.
|
|
|
2010
|
Bastow R, Beynon J, Estelle M, Friesner J, Grotewold E, Lavagi I, Lindsey K, Meyers B, Provart N, Benfey P, Birney E, Braun P, Brendel V, Buell R, Caccamo M, Carrington J, Cherry M, Ecker JR, Eppig J, Forster M, Gutiérrez R, Hilson P, Huala E, Katari M, Kersey P, Kudla J, Ma H, Matsui M, Matthews K, May S, Mayer K, Millar AH, Mjolsness E, Mockler T, Nikolau B, Nordborg M, Rawlings C, Schofield P, Schoof H, Schroeder JI, Sen TZ, Stanzione D, Town C, Toyoda T, Vision T, Walsh S, Wang X, Ware D, Weckwerth W, Yang W
(2010)
An international bioinformatics infrastructure to underpin the Arabidopsis community
The Plant Cell
22(8):2530-6.
|
|
|
2010
|
Narsai R, Castleden I, Whelan J
(2010)
Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana.
BMC Plant Biology
10:262.
|
|
|
2010
|
Carrie C, Murcha MW, Whelan J
(2010)
An in silico analysis of the mitochondrial protein import apparatus of plants.
BMC Plant Biology
10:249.
|
|
|
2010
|
Albrecht V, Simková K, Carrie C, Delannoy E, Giraud E, Whelan J, Small ID, Apel K, Badger MR, Pogson BJ
(2010)
The cytoskeleton and the peroxisomal-targeted snowy cotyledon3 protein are required for chloroplast development in Arabidopsis.
The Plant Cell
22(10):3423-38.
|
|
|
2010
|
Carrie C, Giraud E, Duncan O, Xu L, Wang Y, Huang S, Clifton R, Murcha M, Filipovska A, Rackham O, Vrielink A, Whelan J
(2010)
Conserved and novel functions for Arabidopsis thaliana MIA40 in assembly of proteins in mitochondria and peroxisomes.
The Journal of Biological Chemistry
285(46):36138-48.
|
|
|
2010
|
Zheng L, Ying Y, Wang L, Wang F, Whelan J, Shou H
(2010)
Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in <i>Oryza sativa</i>
BMC Plant Biology
10:166.
|
|
|
2010
|
Narsai R, Ivanova A, Ng S, Whelan J
(2010)
Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets.
BMC Plant Biology
10:56.
|
|
|
2010
|
Van Aken O, Whelan J, Van Breusegem F
(2010)
Prohibitins: mitochondrial partners in development and stress response
Trends in Plant Science
15(5):275-82.
|
|
|
2010
|
Tognetti VB, Van Aken O, Morreel K, Vandenbroucke K, Van De Cotte B, De Clercq I, Chiwocha S, Fenske R, Prinsen E, Boerjan W, Genty B, Stubbs KA, Inzé D, Van Breusegem F
(2010)
Perturbation of indole-3-butyric acid homeostasis by the UDP-glucosyltransferase UGT74E2 modulates Arabidopsis architecture and water stress tolerance.
The Plant Cell
22(8):2660-79.
|
|
|
2010
|
Giraud E, Ng S, Carrie C, Duncan O, Low J, Lee CP, Van Aken O, Millar AH, Murcha M, Whelan J
(2010)
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana.
The Plant Cell
22(12):3921-34.
|
|
|
2010
|
Chan KX, Crisp PA, Estavillo GM, Pogson BJ
(2010)
Chloroplast-to-nucleus communication: current knowledge, experimental strategies and relationship to drought stress signaling.
Plant Signaling and Behavior
5(12):1575-82.
|
|
|
2010
|
Muthuramalingam M, Dietz KJ, Ströher E
(2010)
Thiol-disulfide redox proteomics in plant research.
Methods in Molecular Biology
639:219-38.
|
|
|
2009
|
Grassl J, Westbrook JA, Robinson A, Borén M, Dunn MJ, Clyne RK
(2009)
Preserving the yeast proteome from sample degradation.
Proteomics
9(20):4616-26.
|
|
|
2009
|
Advances in yeast proteomics Clyne R, Grassl J
(2009)
Advances in yeast proteomics.
Proteomics
9(20):4587.
|
|
|
2009
|
Lister R, Ecker JR
(2009)
Finding the fifth base: Genome-wide sequencing of cytosine methylation.
Genome Research
19(6):959-66.
|
|
|
2009
|
Lister R, Gregory BD, Ecker JR
(2009)
Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond.
Current Opinion in Plant Biology
12(2):107-18.
|
|
|
2009
|
Kreuzwieser J, Hauberg J, Howell KA, Carroll A, Rennenberg H, Millar AH, Whelan J
(2009)
Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia.
Plant Physiology
149(1):461-73.
|
|
|
2009
|
Carrie C, Kühn K, Murcha MW, Duncan O, Small ID, O'Toole N, Whelan J
(2009)
Approaches to defining dual-targeted proteins in Arabidopsis.
The Plant Journal
57(6):1128-39.
|
|
|
2009
|
Taylor NL, Tan YF, Jacoby RP, Millar AH
(2009)
Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes.
Journal of Proteomics
72(3):367-78.
|
|
|
2009
|
Huang S, Taylor NL, Narsai R, Eubel H, Whelan J, Millar AH
(2009)
Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity.
Plant Physiology
149(2):719-34.
|
|
|
2009
|
Sappl PG, Carroll AJ, Clifton R, Lister R, Whelan J, Harvey Millar A, Singh KB
(2009)
The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress.
The Plant Journal
58(1):53-68.
|
|
|
2009
|
Baer B, Heazlewood JL, Taylor NL, Eubel H, Millar AH
(2009)
The seminal fluid proteome of the honeybee Apis mellifera.
Proteomics
9(8):2085-97.
|
|
|
2009
|
Zhou W, Cheng Y, Yap A, Chateigner-Boutin AL, Delannoy E, Hammani K, Small I, Huang J
(2009)
The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth.
The Plant Journal
58(1):82-96.
|
|
|
2009
|
Carrie C, Giraud E, Whelan J
(2009)
Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts.
FEBS Journal
276(5):1187-95.
|
|
|
2009
|
Howell KA, Narsai R, Carroll A, Ivanova A, Lohse M, Usadel B, Millar AH, Whelan J
(2009)
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process.
Plant Physiology
149(2):961-80.
|
|
|
2009
|
Taylor NL, Millar AH
(2009)
Long bugs to small plants — the role of Lon1 in protein stability and thermotolerance
The New phytologist
181(3): 505-508.
|
|
|
2009
|
Wilson PB, Estavillo GM, Field KJ, Pornsiriwong W, Carroll AJ, Howell KA, Woo NS, Lake JA, Smith SM, Harvey Millar A, Von Caemmerer S, Pogson BJ
(2009)
The nucleotidase/phosphatase SAL1 is a negative regulator of drought tolerance in Arabidopsis.
The Plant Journal
58(2):299-317.
|
|
|
2009
|
Wiszniewski AA, Zhou W, Smith SM, Bussell JD
(2009)
Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins.
Plant Molecular Biology
69(5):503-15.
|
|
|
2009
|
Förster B, Osmond CB, Pogson BJ
(2009)
De-novo Synthesis and Degradation of Lx- and V-cycle Pigments during Shade and Sun Acclimation in Avocado Leaves (<i>P. americana</i>)
Plant Physiology
149(2):1179-95.
|
|
|
2009
|
Cazzonelli CI, Cuttriss AJ, Cossetto SB, Pye W, Crisp P, Whelan J, Finnegan EJ, Turnbull C, Pogson BJ
(2009)
Regulation of carotenoid composition and shoot branching in Arabidopsis by a chromatin modifying histone methyltransferase, SDG8.
The Plant Cell
21(1):39-53.
|
|
|
2009
|
Okuda K, Chateigner-Boutin AL, Nakamura T, Delannoy E, Sugita M, Myouga F, Motohashi R, Shinozaki K, Small I, Shikanai T
(2009)
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.
The Plant Cell
21(1):146-56.
|
|
|
2009
|
Tillich M, Hardel SL, Kupsch C, Armbruster U, Delannoy E, Gualberto JM, Lehwark P, Leister D, Small ID, Schmitz-Linneweber C
(2009)
Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs.
Proceedings of the National Academy of Sciences of the United States of America
106(14):6002-7.
|
|
|
2009
|
Cazzonelli CI, Yin K, Pogson BJ
(2009)
Potential implications for epigenetic regulation of carotenoid biosynthesis during root and shoot development.
Plant Signaling and Behavior
4(4):339-41.
|
|
|
2009
|
Cazzonelli CI, Millar T, Finnegan EJ, Pogson BJ
(2009)
Promoting gene expression in plants by permissive histone lysine methylation.
Plant Signaling and Behavior
4(6):484-8.
|
|
|
2009
|
Howitt CA, Cavanagh CR, Bowerman AF, Cazzonelli C, Rampling L, Mimica JL, Pogson BJ
(2009)
Alternative splicing, activation of cryptic exons and amino acid substitutions in carotenoid biosynthetic genes are associated with lutein accumulation in wheat endosperm.
Functional and Integrative Genomics
9(3):363-76.
|
|
|
2009
|
Bond DM, Wilson I, Dennis ES, Pogson BJ, Finnegan EJ
(2009)
VERNALIZATION INSENSITIVE 3 (VIN3) is required for the response of Arabidopsis thaliana seedlings exposed to low oxygen conditions
The Plant Journal
59(4):576-87.
|
|
|
2009
|
Bond DM, Dennis ES, Pogson BJ, Finnegan EJ
(2009)
Histone acetylation, VERNALIZATION INSENSITIVE 3, FLOWERING LOCUS C and the vernalization response
Molecular Plant
2(4):724-737.
|
|
|
2009
|
Millar AH, Carrie C, Pogson B, Whelan J
(2009)
Exploring the function-location nexus: using multiple lines of evidence in defining the subcellular location of plant proteins.
The Plant Cell
21(6):1625-31.
|
|
|
2009
|
Giraud E, Van Aken O, Ho LH, Whelan J
(2009)
The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a.
Plant Physiology
150(3):1286-96.
|
|
|
2009
|
Huang S, Taylor NL, Whelan J, Millar AH
(2009)
Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications and cleavage motifs
Plant Physiology
150(3):1272-85.
|
|
|
2009
|
Van Aken O, Giraud E, Clifton R, Whelan J
(2009)
Alternative oxidase: a target and regulator of stress responses.
Physiologia Plantarum
137(4):354-61.
|
|
|
2009
|
Marti MC, Olmos E, Calvete JJ, Diaz I, Barranco-Medina S, Whelan J, Lazaro JJ, Sevilla F, Jimenez A
(2009)
Mitochondrial and nuclear localization of a novel pea thioredoxin: identification of its mitochondrial target proteins
Plant Physiology
150(2):646-57.
|
|
|
2009
|
Davies SM, Rackham O, Shearwood AM, Hamilton KL, Narsai R, Whelan J, Filipovska A
(2009)
Pentatricopeptide repeat domain protein 3 associates with the mitochondrial small ribosomal subunit and regulates translation.
FEBS Letters
583(12):1853-8.
|
|
|
2009
|
Lanet E, Delannoy E, Sormani R, Floris M, Brodersen P, Crété P, Voinnet O, Robaglia C
(2009)
Biochemical evidence for translational repression by Arabidopsis microRNAs.
The Plant Cell
21(6):1762-8.
|
|
|
2009
|
Tan KC, Heazlewood JL, Millar AH, Oliver RP, Solomon PS
(2009)
Proteomic identification of extracellular proteins regulated by the Gna1 Galpha subunit in Stagonospora nodorum.
Mycological Research
113(5):523-31.
|
|
|
2009
|
Delannoy E, Le Ret M, Faivre-Nitschke E, Estavillo GM, Bergdoll M, Taylor NL, Pogson BJ, Small I, Imbault P, Gualberto JM
(2009)
Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.
The Plant Cell
21(7):2058-71.
|
|
|
2009
|
Baer B, Eubel H, Taylor NL, O'Toole N, Millar AH
(2009)
Insights into female sperm storage from the spermathecal fluid proteome of the honeybee Apis mellifera.
Genome Biology
10(6):R67.
|
|
|
2009
|
Ito J, Taylor NL, Castleden I, Weckwerth W, Millar AH, Heazlewood JL
(2009)
A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.
Proteomics
9(17):4229-40.
|
|
|
2009
|
Kumari M, Clarke HJ, Small ID, Siddique KHM
(2009)
Albinism in plants: a major bottleneck in wide hybridization, androgenesis and doubled haploid culture
Critical Reviews in Plant Sciences
28(6): 393-409.
|
|
|
2009
|
Kim E-H, Li X-P, Razeghifard R, Anderson JM, Niyogi KK, Pogson BJ, Chow WS
(2009)
The multiple roles of light-harvesting chlorophyll a.b-protein complexes define structure and optimize function of Arabidopsis chloroplasts: a study using two chlorophyll b-less mutants
Biochimica et Biophysica Acta - Bioenergetics
1787(8): 973-984.
|
|
|
2009
|
Narsai R, Howell KA, Carroll A, Ivanova A, Millar AH, Whelan J
(2009)
Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings.
Plant Physiology
151(1):306-22.
|
|
|
2009
|
Rackham O, Davies SM, Shearwood AM, Hamilton KL, Whelan J, Filipovska A
(2009)
Pentatricopeptide repeat domain protein 1 lowers the levels of mitochondrial leucine tRNAs in cells
Nucleic Acids Research
37(17):5859-67.
|
|
|
2009
|
Zheng L, Huang F, Narsai R, Wu J, Giraud E, He F, Cheng L, Wang F, Wu P, Whelan J, Shou H
(2009)
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings.
Plant Physiology
151(1):262-74.
|
|
|
2009
|
Van Aken O, Zhang B, Carrie C, Uggalla V, Paynter E, Giraud E, Whelan J
(2009)
Defining the mitochondrial stress response in Arabidopsis thaliana.
Molecular Plant
2(6):1310-24.
|
|
|
2009
|
Kühn K, Richter U, Meyer EH, Delannoy E, De Longevialle AF, O'Toole N, Börner T, Millar AH, Small ID, Whelan J
(2009)
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana.
The Plant Cell
21(9):2762-79.
|
|
|
2009
|
Meyer EH, Tomaz T, Carroll AJ, Estavillo G, Delannoy E, Tanz SK, Small ID, Pogson BJ, Millar AH
(2009)
Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night.
Plant Physiology
151(2):603-19.
|
|
|
2009
|
Li J, Francisco P, Zhou W, Edner C, Steup M, Ritte G, Bond CS, Smith SM
(2009)
Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein.
Archives of Biochemistry and Biophysics
489(1-2):92-8.
|
|
|
2009
|
Hammani K, Okuda K, Tanz SK, Chateigner-Boutin AL, Shikanai T, Small I
(2009)
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.
The Plant Cell
21(11):3686-99.
|
|
|
2009
|
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR
(2009)
Human DNA methylomes at base resolution show widespread epigenomic differences
Nature
462(7271): 315-322.
|
|
|
2009
|
Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M, Bellini C
(2009)
Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance.
The Plant Cell
21(10):3119-32.
|
|
|
2009
|
Takahashi S, Milward SE, Fan DY, Chow WS, Badger MR
(2009)
How does cyclic electron flow alleviate photoinhibition in Arabidopsis?
Plant Physiology
149(3):1560-7.
|
|
|
2009
|
Takahashi S, Whitney SM, Badger MR
(2009)
Different thermal sensitivity of the repair of photodamaged photosynthetic machinery in cultured Symbiodinium species.
Proceedings of the National Academy of Sciences of the United States of America
106(9):3237-42.
|
|
|
2009
|
Tazoe Y, Von Caemmerer S, Badger MR, Evans JR
(2009)
Light and CO2 do not affect the mesophyll conductance to CO2 diffusion in wheat leaves.
Journal of Experimental Botany
60(8):2291-301.
|
|
|
2009
|
Beckmann K, Messinger J, Badger MR, Wydrzynski T, Hillier W
(2009)
On-line mass spectrometry: membrane inlet sampling.
Photosynthesis Research
102(2-3):511-22.
|
|
|
2009
|
Nelson DC, Riseborough JA, Flematti GR, Stevens J, Ghisalberti EL, Dixon KW, Smith SM
(2009)
Karrikins discovered in smoke trigger Arabidopsis seed germination by a mechanism requiring gibberellic acid synthesis and light.
Plant Physiology
149(2):863-73.
|
|
|
2009
|
Matthew T, Zhou W, Rupprecht J, Lim L, Thomas-Hall SR, Doebbe A, Kruse O, Hankamer B, Marx UC, Smith SM, Schenk PM
(2009)
The metabolome of Chlamydomonas reinhardtii following induction of anaerobic H2 production by sulfur depletion.
The Journal of Biological Chemistry
284(35):23415-25.
|
|
|
2009
|
Ströher E, Wang XJ, Roloff N, Klein P, Husemann A, Dietz KJ
(2009)
Redox-dependent regulation of the stress-induced zinc-finger protein SAP12 in Arabidopsis thaliana.
Molecular Plant
2(2):357-67.
|
|
|
2009
|
Bräutigam K, Dietzel L, Kleine T, Ströher E, Wormuth D, Dietz KJ, Radke D, Wirtz M, Hell R, Dörmann P, Nunes-Nesi A, Schauer N, Fernie AR, Oliver SN, Geigenberger P, Leister D, Pfannschmidt T
(2009)
Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis.
The Plant Cell
21(9):2715-32.
|
|
|
2009
|
Muthuramalingam M, Seidel T, Laxa M, Nunes De Miranda SM, Gärtner F, Ströher E, Kandlbinder A, Dietz KJ
(2009)
Multiple redox and non-redox interactions define 2-Cys peroxiredoxin as a regulatory hub in the chloroplast.
Molecular Plant
2(6):1273-88.
|
|
|
2008
|
Kursula P, Kursula I, Massimi M, Song YH, Downer J, Stanley WA, Witke W, Wilmanns M
(2008)
High-resolution structural analysis of mammalian profilin 2a complex formation with two physiological ligands: the formin homology 1 domain of mDia1 and the proline-rich domain of VASP.
Journal of Molecular Biology
375(1):270-90.
|
|
|
2008
|
Price GD, Badger MR, Woodger FJ, Long BM
(2008)
Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants.
Journal of Experimental Botany
59(7):1441-61.
|
|
|
2008
|
Black SL, Stanley WA, Filipp FV, Bhairo M, Verma A, Wichmann O, Sattler M, Wilmanns M, Schultz C
(2008)
Probing lipid- and drug-binding domains with fluorescent dyes.
Bioorganic & Medicinal Chemistry
16(3):1162-73.
|
|
|
2008
|
Jellicoe MM, Nichols SJ, Callus BA, Baker MV, Barnard PJ, Berners-Price SJ, Whelan J, Yeoh GC, Filipovska A
(2008)
Bioenergetic differences selectively sensitize tumorigenic liver progenitor cells to a new gold(I) compound
Carcinogenesis
29(6):1124-33.
|
|
|
2008
|
Meyer EH, Millar AH
(2008)
Isolation of mitochondria from plant cell culture
Vol 425, pp 161-169.
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2008
|
Heazlewood JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze WX
(2008)
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor.
Nucleic Acids Research
36(Database issue):D1015-21.
|
|
|
2008
|
O'Toole N, Vakser IA
(2008)
Large-scale characteristics of the energy landscape in protein-protein interactions.
Proteins-Structure Function and Bioinformatics
71(1):144-52.
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|
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2008
|
Losciale P, Oguchi R, Hendrickson L, Hope AB, Corelli-Grappadelli L, Chow WS
(2008)
A rapid, whole-tissue determination of the functional fraction of PSII after photoinhibition of leaves based on flash-induced P700 redox kinetics.
Physiologia Plantarum
132(1):23-32.
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|
|
2008
|
Meyer EH, Taylor NL, Millar AH
(2008)
Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis.
J. Proteome Research
7(2):786-94.
|
|
|
2008
|
Carroll AJ, Heazlewood JL, Ito J, Millar AH
(2008)
Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.
Molecular and Cellular Proteomics
7(2):347-69.
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|
|
2008
|
Cousins AB, Badger MR, Von Caemmerer S
(2008)
C4 photosynthetic isotope exchange in NAD-ME- and NADP-ME-type grasses.
Journal of Experimental Botany
59(7):1695-703.
|
|
|
2008
|
Badger MR, Bek EJ
(2008)
Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle.
Journal of Experimental Botany
59(7):1525-41.
|
|
|
2008
|
Hendrickson L, Sharwood R, Ludwig M, Whitney SM, Badger MR, Von Caemmerer S
(2008)
The effects of Rubisco activase on C4 photosynthesis and metabolism at high temperature.
Journal of Experimental Botany
59(7):1789-98.
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|
|
2008
|
Baroli I, Price GD, Badger MR, Von Caemmerer S
(2008)
The contribution of photosynthesis to the red light response of stomatal conductance.
Plant Physiology
146(2):737-47.
|
|
|
2008
|
Takahashi S, Whitney S, Itoh S, Maruyama T, Badger M
(2008)
Heat stress causes inhibition of the de novo synthesis of antenna proteins and photobleaching in cultured Symbiodinium.
Proceedings of the National Academy of Sciences of the United States of America
105(11):4203-8.
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|
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2008
|
Osmond CB, Forster B, Pogson BJ
(2008)
Dynamics of the truncated lutein epoxide cycle in avocado (Persea Americana L.); implications for efficiency of light harvesting
Photosynthesis. Energy from the Sun (Book)
15:1031-1034.
|
|
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2008
|
Bechtold U, Richard O, Zamboni A, Gapper C, Geisler M, Pogson BJ, Karpinski S, Mullineaux PM
(2008)
Impact of chloroplast- and extracellular-srouced ROS on high light-responsive gene expression in Arabidopsis.
Journal of Experimental Botany
59(2):121-33.
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2008
|
Fulton DC, Stettler M, Mettler T, Vaughan CK, Li J, Francisco P, Gil M, Reinhold H, Eicke S, Messerli G, Dorken G, Halliday K, Smith AM, Smith SM, Zeeman SC
(2008)
Beta-AMYLASE4, a noncatalytic protein required for starch breakdown, acts upstream of three active beta-amylases in Arabidopsis chloroplasts.
The Plant Cell
20(4):1040-58.
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|
|
2008
|
Lee CP, Eubel H, O'Toole N, Millar AH
(2008)
Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism.
Molecular and Cellular Proteomics
7(7):1297-316.
|
|
|
2008
|
Huang S, Colmer TD, Millar AH
(2008)
Does anoxia tolerance involve altering the energy currency towards PPi?
Trends in Plant Science
13(5):221-227.
|
|
|
2008
|
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR
(2008)
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
Cell
133(3):523-36.
|
|
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2008
|
O'Toole N, Hattori M, Andres C, Iida K, Lurin C, Schmitz-Linneweber C, Sugita M, Small I
(2008)
On the expansion of the pentatricopeptide repeat gene family in plants.
Molecular Biology and Evolution
25(6):1120-8.
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|
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2008
|
Armstrong AF, Badger MR, Day DA, Barthet MM, Smith PM, Millar AH, Whelan J, Atkin OK
(2008)
Dynamic changes in the mitochondrial electron transport chain underpinning cold acclimation of leaf respiration.
Plant, cell & environment
31(8):1156-69.
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|
|
2008
|
Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR
(2008)
A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development
Developmental Cell
14(6):854-866.
|
|
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2008
|
De Longevialle AF, Hendrickson L, Taylor NL, Delannoy E, Lurin C, Badger M, Millar AH, Small I
(2008)
The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana.
The Plant Journal
56(1):157-68.
|
|
|
2008
|
Ho LH, Giraud E, Uggalla V, Lister R, Clifton R, Glen A, Thirkettle-Watts D, Van Aken O, Whelan J
(2008)
Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis.
Plant Physiology
147(4):1858-73.
|
|
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2008
|
Chateigner-Boutin AL, Ramos-Vega M, Guevara-García A, Andrés C, De La Luz Gutiérrez-Nava M, Cantero A, Delannoy E, Jiménez LF, Lurin C, Small I, León P
(2008)
CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.
The Plant Journal
56(4):590-602.
|
|
|
2008
|
Pogson BJ, Woo NS, Förster B, Small ID
(2008)
Plastid signalling to the nucleus and beyond.
Trends in Plant Science
13(11):602-9.
|
|
|
2008
|
Carrie C, Murcha MW, Kuehn K, Duncan O, Barthet M, Smith PM, Eubel H, Meyer E, Day DA, Millar AH, Whelan J
(2008)
Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana.
FEBS Letters
582(20):3073-9.
|
|
|
2008
|
Tan KC, Heazlewood JL, Millar AH, Thomson G, Oliver RP, Solomon PS
(2008)
A signaling-regulated, short-chain dehydrogenase of Stagonospora nodorum regulates asexual development.
Eukaryotic Cell
7(11):1916-29.
|
|
|
2008
|
Garmier M, Carroll AJ, Delannoy E, Vallet C, Day DA, Small ID, Millar AH
(2008)
Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis.
Plant Physiology
148(3):1324-41.
|
|
|
2008
|
Zhu Z, Tovchigrechko A, Baronova T, Gao Y, Douguet D, O'Toole N, Vakser IA
(2008)
Large-scale structural modeling of protein complexes at low resolution.
Journal of Bioinformatics and Computational Biology
6(4):789-810.
|
|
|
2008
|
Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM, Millar AH
(2008)
Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes.
Plant Physiology
148(4):1809-29.
|
|
|
2008
|
Schmitz-Linneweber C, Small ID
(2008)
Pentatricopeptide repeat proteins: a socket set for organelle gene expression
Trends in Plant Science
13(12):663-70.
|
|
|
2008
|
Woo NS, Badger MR, Pogson BJ
(2008)
A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence.
Plant Methods
4:27.
|
|
|
2008
|
Weckwerth W, Baginsky S, Van Wijk K, Heazlewood JL, Millar H
(2008)
The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology.
J. Proteome Research
7(10):4209-10.
|
|
|
2008
|
Giraud E, Ho LH, Clifton R, Carroll A, Estavillo G, Tan YF, Howell KA, Ivanova A, Pogson BJ, Millar AH, Whelan J
(2008)
The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress.
Plant Physiology
147(2):595-610.
|
|
|
2008
|
Fallahi H, Scofield GN, Badger MR, Chow WS, Furbank RT, Ruan YL
(2008)
Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development.
Journal of Experimental Botany
59(12):3283-95.
|
|
|
2008
|
Cousins AB, Pracharoenwattana I, Zhou W, Smith SM, Badger MR
(2008)
Peroxisomal malate dehydrogenase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release.
Plant Physiology
148(2):786-95.
|
|
|
2008
|
Pracharoenwattana I, Smith SM
(2008)
When is a peroxisome not a peroxisome?
Trends in Plant Science
13(10):522-5.
|
|
|
2008
|
Ströher E, Dietz KJ
(2008)
The dynamic thiol-disulphide redox proteome of the Arabidopsis thaliana chloroplast as revealed by differential electrophoretic mobility.
Physiologia Plantarum
133(3):566-83.
|
|
|
2008
|
Shaikhali J, Heiber I, Seidel T, Ströher E, Hiltscher H, Birkmann S, Dietz KJ, Baier M
(2008)
The redox-sensitive transcription factor Rap2.4a controls nuclear expression of 2-Cys peroxiredoxin A and other chloroplast antioxidant enzymes.
BMC Plant Biology
8:48.
|
|
|
2007
|
Hünnerkopf R, Grassl J, Thome J
(2007)
Proteomics: biomarker research in psychiatry
Proteomics
75(10):579-86.
|
|
|
2007
|
Eubel H, Heazlewood JL, Millar AH
(2007)
Isolation and subfractionation of plant mitochondria for proteomic analysis.
Methods in Molecular Biology
355:49-62.
|
|
|
2007
|
Andrés C, Lurin C, Small ID
(2007)
The multifarious roles of PPR proteins in plant mitochondrial gene expression
Physiologia Plantarum
129, 14-22.
|
|
|
2007
|
Ito J, Heazlewood JL, Millar AH
(2007)
The plant mitochondrial proteome and the challenge of defining the post-translational modifications responsible for signaling and stress effects on respiratory functions
Physiologia Plantarum
129, 207-224.
|
|
|
2007
|
Zeeman SC, Smith SM, Smith AM
(2007)
The diurnal metabolism of leaf starch.
Biochemical Journal
401(1):13-28.
|
|
|
2007
|
Millar AH, Liddell A, Leaver CJ
(2007)
Isolation and Sub-Fractionation of Mitochondria from Plants
|
|
|
2007
|
Clifton R, Whelan J
(2007)
Plant Mitochondrial Transcriptomics by Quantitative Real-Time PCR
|
|
|
2007
|
Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I, Millar AH
(2007)
SUBA: the Arabidopsis Subcellular Database.
Nucleic Acids Research
35(Database issue):D213-8.
|
|
|
2007
|
Carrie C, Murcha MW, Millar AH, Smith SM, Whelan J
(2007)
Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria.
Plant Molecular Biology
63(1):97-108.
|
|
|
2007
|
Murcha MW, Elhafez D, Lister R, Tonti-Filippini J, Baumgartner M, Philippar K, Carrie C, Mokranjac D, Soll J, Whelan J
(2007)
Characterization of the preprotein and amino acid transporter gene family in Arabidopsis.
Plant Physiology
143(1):199-212.
|
|
|
2007
|
Taylor NL, Millar AH
(2007)
Oxidative Stress and Plant Mitochondria.
|
|
|
2007
|
Heazlewood JL, Millar AH
(2007)
Arabidopsis Mitochondrial Proteomics
|
|
|
2007
|
Meyer EH, Heazlewood JL, Millar AH
(2007)
Mitochondrial acyl carrier proteins in Arabidopsis thaliana are predominantly soluble matrix proteins and none can be confirmed as subunits of respiratory Complex I.
Plant Molecular Biology
64(3):319-27.
|
|
|
2007
|
Fan D-Y, Nie Q, Hope AB, Hillier W, Pogson BJ, Chow WS
(2007)
Quantification of cyclic electron flow around Photosystem I in spinach leaves during photosynthetic induction
Photosynthesis Research
94(2-3):347-57.
|
|
|
2007
|
McNevin DB, Badger MR, Kane HJ, Farquhar GD
(2007)
Measurement of (carbon) kinetic isotope effect by Rayleigh fractionation using membrane inlet mass spectrometry for CO2 consuming reactions
Functional Plant Biology
33(12): 1115-1128.
|
|
|
2007
|
Pracharoenwattana I, Cornah JE, Smith SM
(2007)
Arabidopsis peroxisomal malate dehydrogenase functions in beta-oxidation but not in the glyoxylate cycle.
The Plant Journal
50(3):381-90.
|
|
|
2007
|
Ho LH, Giraud E, Lister R, Thirkettle-Watts D, Low J, Clifton R, Howell KA, Carrie C, Donald T, Whelan J
(2007)
Characterization of the regulatory and expression context of an alternative oxidase gene provides insights into cyanide-insensitive respiration during growth and development.
Plant Physiology
143(4):1519-33.
|
|
|
2007
|
Howell KA, Cheng K, Murcha MW, Jenkin LE, Millar AH, Whelan J
(2007)
Oxygen initiation of respiration and mitochondrial biogenesis in rice.
The Journal of Biological Chemistry
282(21):15619-31.
|
|
|
2007
|
Cuttriss AJ, Chubb AC, Alawady A, Grimm B, Pogson BJ
(2007)
Regulation of lutein biosynthesis and prolamellar body formation in Arabidopsis.
Functional Plant Biology
34(8):663-672.
|
|
|
2007
|
Glaser E, Whelan J
(2007)
Import of nuclear-encoded mitochondrial proteins.
|
|
|
2007
|
Small ID
(2007)
RNAi for revealing and engineering plant gene functions
Current Opinion in Biotechnology
18(2):148-53.
|
|
|
2007
|
Pusnik M, Small ID, Read LK, Fabbro T, Schneider A
(2007)
Pentatricopeptide repeat proteins in <i>T. brucei</i> function in mitochondrial ribosomes
Molecular and Cellular Biology
27(19): 6876-88.
|
|
|
2007
|
Maliga P, Small ID
(2007)
Plant biotechnology 2007: all three genomes make contributions to progress
Current Opinion in Biotechnology
18, 97-99.
|
|
|
2007
|
Legen J, Wanner G, Herrmann RG, Small ID, Schmitz-Linneweber C
(2007)
Plastid tRNA Genes <i>trnC-GCA</i> and <i>trnN-GUU</i> are essential for plant cell development
The Plant Journal
51(5):751-62.
|
|
|
2007
|
Eubel H, Lee CP, Kuo J, Meyer EH, Taylor NL, Millar AH
(2007)
Free-flow electrophoresis for purification of plant mitochondria by surface charge.
The Plant Journal
52(3):583-94.
|
|
|
2007
|
Winger AM, Taylor NL, Heazlewood JL, Day DA, Millar AH
(2007)
Identification of intra- and intermolecular disulphide bonding in the plant mitochondrial proteome by diagonal gel electrophoresis.
Proteomics
7(22):4158-70.
|
|
|
2007
|
Geisler-Lee J, O'Toole N, Ammar R, Provart NJ, Millar AH, Geisler M
(2007)
A predicted interactome for Arabidopsis.
Plant Physiology
145(2):317-29.
|
|
|
2007
|
Chateigner-Boutin AL, Small I
(2007)
A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons.
Nucleic Acids Research
35(17):e114.
|
|
|
2007
|
Saloné V, Rãdinger M, Polsakiewicz M, Hoffmann B, Groth-Malonek M, Szurek B, Small ID, Knoop V, Lurin C
(2007)
A hypothesis on the identification of the editing enzyme in plant organelles
FEBS Letters
581(22):4132-8.
|
|
|
2007
|
Howell KA, Millar AH, Whelan J
(2007)
Building the Powerhouse: What are the Signals Involved in Plant Mitochondrial Biogenesis?
Plant Signaling and Behavior
2(5):428-30.
|
|
|
2007
|
Olejnik K, Murcha MW, Whelan J, Kraszewska E
(2007)
Cloning and characterisation of AtNUDT13, a novel mitochondrial Arabidopsis thaliana Nudix hydrolase specific for long-chain diadenosine polyphosphates
FEBS Journal
274(18):4877-85.
|
|
|
2007
|
Thatcher LF, Carrie C, Andersson CR, Sivasithamparam K, Whelan J, Singh KB
(2007)
Differential gene expression and subcellular targeting of Arabidopsis glutathione S-transferase F8 is achieved through alternative transcription start sites.
The Journal of Biological Chemistry
282(39):28915-28928.
|
|
|
2007
|
Lister R, Carrie C, Duncan O, Ho LH, Howell KA, Murcha MW, Whelan J
(2007)
Functional definition of outer membrane proteins involved in preprotein import into mitochondria.
The Plant Cell
19(11):3739-59.
|
|
|
2007
|
De Longevialle AF, Meyer EH, Andrés C, Taylor NL, Lurin C, Millar AH, Small ID
(2007)
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana.
The Plant Cell
19(10):3256-65.
|
|
|
2007
|
Delannoy E, Stanley WA, Bond CS, Small ID
(2007)
Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles.
Biochemical Society Transactions
35(Pt 6):1643-7.
|
|
|
2007
|
Stanley WA, Fodor K, Marti-Renom MA, Schliebs W, Wilmanns M
(2007)
Protein translocation into peroxisomes by ring-shaped import receptors.
FEBS Letters
581(25):4795-802.
|
|
|
2007
|
Winger AM, Taylor NL, Heazlewood JL, Day DA, Millar AH
(2007)
The Cytotoxic lipid peroxidation product 4-hydroxy-2-nonenal covalently modifies a selective range of proteins linked to respiratory function in plant mitochondria.
The Journal of Biological Chemistry
282(52):37436-47.
|
|
|
2007
|
Narsai R, Howell KA, Millar AH, O'Toole N, Small I, Whelan J
(2007)
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana.
The Plant Cell
19(11):3418-36.
|
|
|
2007
|
Edner C, Li J, Albrecht T, Mahlow S, Hejazi M, Hussain H, Kaplan F, Guy C, Smith SM, Steup M, Ritte G
(2007)
Glucan, water dikinase activity stimulates breakdown of starch granules by plastidial beta-amylases.
Plant Physiology
145(1):17-28.
|
|
|
2007
|
Mcnevin DB, Badger MR, Whitney SM, Von Caemmerer S, Tcherkez GG, Farquhar GD
(2007)
Differences in carbon isotope discrimination of three variants of D-ribulose-1,5-bisphosphate carboxylase/oxygenase reflect differences in their catalytic mechanisms.
The Journal of Biological Chemistry
282(49):36068-76.
|
|
|
2007
|
Cousins AB, Baroli I, Badger MR, Ivakov A, Lea PJ, Leegood RC, Von Caemmerer S
(2007)
The role of phosphoenolpyruvate carboxylase during C4 photosynthetic isotope exchange and stomatal conductance.
Plant Physiology
145(3):1006-17.
|
|
|
2007
|
Long BM, Badger MR, Whitney SM, Price GD
(2007)
Analysis of carboxysomes from Synechococcus PCC7942 reveals multiple Rubisco complexes with carboxysomal proteins CcmM and CcaA.
The Journal of Biological Chemistry
282(40):29323-35.
|
|
|
2007
|
Mueller-Cajar O, Badger MR
(2007)
New roads lead to Rubisco in archaebacteria.
Bioessays
29(8):722-4.
|
|
|
2007
|
Takahashi S, Bauwe H, Badger M
(2007)
Impairment of the photorespiratory pathway accelerates photoinhibition of photosystem II by suppression of repair but not acceleration of damage processes in Arabidopsis.
Plant Physiology
144(1):487-94.
|
|
|
2007
|
Mcconnell IL, Badger MR, Wydrzynski T, Hillier W
(2007)
A quantitative assessment of the carbonic anhydrase activity in photosystem II.
Biochimica et Biophysica Acta - General Subjects
1767(6):639-47.
|
|
|
2007
|
Griffiths H, Cousins AB, Badger MR, Von Caemmerer S
(2007)
Discrimination in the dark. Resolving the interplay between metabolic and physical constraints to phosphoenolpyruvate carboxylase activity during the crassulacean acid metabolism cycle.
Plant Physiology
143(2):1055-67.
|
|
|
2007
|
Rossel JB, Wilson PB, Hussain D, Woo NS, Gordon MJ, Mewett OP, Howell KA, Whelan J, Kazan K, Pogson BJ
(2007)
Systemic and intracellular responses to photooxidative stress in Arabidopsis.
The Plant Cell
19(12):4091-110.
|
|
|
2007
|
Glaring MA, Zygadlo A, Thorneycroft D, Schulz A, Smith SM, Blennow A, Baunsgaard L
(2007)
An extra-plastidial alpha-glucan, water dikinase from Arabidopsis phosphorylates amylopectin in vitro and is not necessary for transient starch degradation.
Journal of Experimental Botany
58(14):3949-60.
|
|
|
2007
|
Footitt S, Cornah JE, Pracharoenwattana I, Bryce JH, Smith SM
(2007)
The Arabidopsis 3-ketoacyl-CoA thiolase-2 (kat2-1) mutant exhibits increased flowering but reduced reproductive success.
Journal of Experimental Botany
58(11):2959-68.
|
|
|
2007
|
Heiber I, Ströher E, Raatz B, Busse I, Kahmann U, Bevan MW, Dietz KJ, Baier M
(2007)
The redox imbalanced mutants of Arabidopsis differentiate signaling pathways for redox regulation of chloroplast antioxidant enzymes.
Plant Physiology
143(4):1774-88.
|
|
|
2006
|
Grassl J, Morishita M, Lewis PD, Leonard RC, Thomas G
(2006)
Profiling the breast cancer proteome--the new tool of the future?
Proteomics
18(8):581-6.
|
|
|
2006
|
Badger MR, Price GD, Long BM, Woodger FJ
(2006)
The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism.
Journal of Experimental Botany
57(2):249-65.
|
|
|
2006
|
Baker A, Graham IA, Holdsworth M, Smith SM, Theodoulou FL
(2006)
Chewing the fat: beta-oxidation in signalling and development.
Trends in Plant Science
11(3):124-32.
|
|
|
2006
|
Delatte T, Umhang M, Trevisan M, Eicke S, Thorneycroft D, Smith SM, Zeeman SC
(2006)
Evidence for distinct mechanisms of starch granule breakdown in plants.
The Journal of Biological Chemistry
281(17):12050-9.
|
|
|
2006
|
Niittylä T, Comparot-Moss S, Lue WL, Messerli G, Trevisan M, Seymour MD, Gatehouse JA, Villadsen D, Smith SM, Chen J, Zeeman SC, Smith AM
(2006)
Similar protein phosphatases control starch metabolism in plants and glycogen metabolism in mammals.
The Journal of Biological Chemistry
281(17):11815-8.
|
|
|
2006
|
Holt KE, Millar AH, Whelan J
(2006)
<i>ModuleFinder</i> and <i>CoReg</i>: linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants
Plant Methods
2: 8.
|
|
|
2006
|
Lister R, Whelan J
(2006)
Mitochondrial protein import: convergent solutions for receptor structure
Current Biology
16(6): R197-9.
|
|
|
2006
|
Clifton R, Millar AH, Whelan J
(2006)
Alternative oxidases in Arabidopsis: a comparative analysis of differential expression in the gene family provides new insights into function of non-phosphorylating bypasses.
Biochimica et Biophysica Acta - General Subjects
1757(7):730-41.
|
|
|
2006
|
Elhafez D, Murcha MW, Clifton R, Soole KL, Day DA, Whelan J
(2006)
Characterization of mitochondrial alternative NAD(P)H dehydrogenases in Arabidopsis: intraorganelle location and expression.
Plant and Cell Physiology
47(1):43-54.
|
|
|
2006
|
Howell KA, Millar AH, Whelan J
(2006)
Ordered assembly of mitochondria during rice germination begins with pro-mitochondrial structures rich in components of the protein import apparatus.
Plant Molecular Biology
60(2):201-23.
|
|
|
2006
|
Cuttriss AJ, Mimica J, Howitt C, Pogson BJ
(2006)
Carotenoid Metabolism.
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2006
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Rossel JB, Walter PB, Hendrickson L, Chow WS, Poole A, Mullineaux PM, Pogson BJ
(2006)
A mutation affecting ASCORBATE PEROXIDASE 2 gene expression reveals a link between responses to high light and drought tolerance.
Plant, Cell & Environment
29(2):269-81.
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2006
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Howitt CA, Pogson BJ
(2006)
Carotenoid accumulation and function in seeds and non-green tissues
Plant, Cell & Environment
29(3):435-45.
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2006
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DellaPenna D, Pogson BJ
(2006)
Vitamin synthesis in plants: tocopherols and carotenoids
Annual Review of Plant Biology
57, 711-738.
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2006
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Förster B, Mathesius U, Pogson BJ
(2006)
Comparative proteomics of high light stress in the model alga Chlamydomonas reinhardtii.
Proteomics
6(15):4309-20.
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2006
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Sun ZL, Lee HY, Matsubara S, Hope AB, Pogson BJ, Hong YN, Chow WS
(2006)
Photoprotection of residual functional Photosystem II units that survive illumination in the absence of repair, and their critical role in subsequent recovery
Physiologia Plantarum
128, 415-424.
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2006
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Sundaramoorthy R, Micossi E, Alphey MS, Germain V, Bryce JH, Smith SM, Leonard GA, Hunter WN
(2006)
The crystal structure of a plant 3-ketoacyl-CoA thiolase reveals the potential for redox control of peroxisomal fatty acid beta-oxidation.
Journal of Molecular Biology
359(2):347-57.
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2006
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Kunze M, Pracharoenwattana I, Smith SM, Hartig A
(2006)
A central role for the peroxisomal membrane in glyoxylate cycle function.
Biochimica et Biophysica Acta - General Subjects
1763(12):1441-52.
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2006
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Alexeyenko A, Millar AH, Whelan J, Sonnhammer ELL
(2006)
Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis
Trends in Genetics
22(11):589-93.
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2006
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Foley RC, Sappl PG, Perl-Treves R, Millar AH, Singh KB
(2006)
Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner.
Plant Physiology
142(1):245-53.
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2006
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Cousins AB, Badger MR, Von Caemmerer S
(2006)
Carbonic anhydrase and its influence on carbon isotope discrimination during C4 photosynthesis. Insights from antisense RNA in Flaveria bidentis.
Plant Physiology
141(1):232-42.
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2006
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Hillier W, Mcconnell I, Badger MR, Boussac A, Klimov VV, Dismukes GC, Wydrzynski T
(2006)
Quantitative assessment of intrinsic carbonic anhydrase activity and the capacity for bicarbonate oxidation in photosystem II.
Biochemistry
45(7):2094-102.
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2006
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Ito J, Heazlewood JL, Millar AH
(2006)
Analysis of the soluble ATP-binding proteome of plant mitochondria identifies new proteins and nucleotide triphosphate interactions within the matrix.
J. Proteome Research
5(12):3459-69.
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2006
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Millar AH, Whelan J, Small ID
(2006)
Recent surprises in protein targeting to mitochondria and plastids
Current Opinion in Plant Biology
9(6):610-5.
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2006
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Heazlewood JL, Millar AH
(2006)
Plant Proteomics: Challenges and Resources
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2006
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Cousins AB, Badger MR, Von Caemmerer S
(2006)
A transgenic approach to understanding the influence of carbonic anhydrase on C18OO discrimination during C4 photosynthesis.
Plant Physiology
142(2):662-72.
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2005
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Pracharoenwattana I, Cornah JE, Smith SM
(2005)
Arabidopsis peroxisomal citrate synthase is required for fatty acid respiration and seed germination.
The Plant Cell
17(7):2037-48.
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2005
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Yu TS, Zeeman SC, Thorneycroft D, Fulton DC, Dunstan H, Lue WL, Hegemann B, Tung SY, Umemoto T, Chapple A, Tsai DL, Wang SM, Smith AM, Chen J, Smith SM
(2005)
alpha-Amylase is not required for breakdown of transitory starch in Arabidopsis leaves.
The Journal of Biological Chemistry
280(11):9773-9.
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2005
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Smith AM, Zeeman SC, Smith SM
(2005)
Starch degradation.
Annual Review of Plant Biology
56:73-98.
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2005
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De Coninck B, Le Roy K, Francis I, Clerens S, Vergauwen R, Halliday A, Smith SM, Van Laere A, Van den Ende W
(2005)
AtcwINV3 and 6 are not invertases but are fructan exohydrolases with different substrate specificities
Plant, Cell & Environment
28(4): 432-443.
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2005
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Hendrickson L, Förster B, Pogson BJ, Chow WS
(2005)
A simple chlorophyll fluorescence parameter that correlates with the rate coefficient of photoinactivation of photosystem II.
Photosynthesis Research
84(1-3):43-9.
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2005
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Pogson BJ, Rissler HM, Frank HA
(2005)
The roles of carotenoids in photosystem II of higher plants
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2005
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Millar AH, Heazlewood JL, Kristensen BK, Braun HP, Møller IM
(2005)
The plant mitochondrial proteome.
Trends in Plant Science
10(1):36-43.
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2005
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Taylor NL, Heazlewood JL, Day DA, Millar AH
(2005)
Differential impact of environmental stresses on the pea mitochondrial proteome.
Molecular and Cellular Proteomics
4(8):1122-33.
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2005
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Huang S, Greenway H, Colmer TD, Millar AH
(2005)
Identification of proteins synthesised in rice coleoptiles during prolonged anoxia
Annals of Botany
96(4):703-15.
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2005
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Winger AM, Millar AH, Day DA
(2005)
Sensitivity of plant mitochondrial terminal oxidases to the lipid peroxidation product 4-hydroxy-2-nonenal (HNE).
Biochemical Journal
387(Pt 3):865-70.
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2005
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Heazlewood JL, Millar AH
(2005)
AMPDB: the Arabidopsis Mitochondrial Protein Database.
Nucleic Acids Research
33(Database issue):D605-10.
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2005
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Long BM, Price GD, Badger MR
(2005)
Proteomic assessment of an established technique for carboxysome enrichment from Synechococcus PCC7942
Canadian Journal of Botany
83(7): 746-757.
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2005
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Daley DO, Whelan J
(2005)
Why genes persist in organelle genomes
Genome Biology
6(5):110.
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2005
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Clifton R, Lister R, Parker KL, Sappl PG, Elhafez D, Millar AH, Day DA, Whelan J
(2005)
Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana.
Plant Molecular Biology
58(2):193-212.
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2005
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Murcha MW, Elhafez D, Millar AH, Whelan J
(2005)
The C-terminal region of TIM17 links the outer and inner mitochondrial membranes in Arabidopsis and is essential for protein import.
The Journal of Biological Chemistry
280(16):16476-83.
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2005
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Lister R, Hulett JM, Lithgow T, Whelan J
(2005)
Protein import into mitochondria: endosymbiotic origins and functions today
Molecular Membrane Biology
22(1-2):87-100.
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2005
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Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Dehais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlné G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Rivière S, Rombauts S, Rouzé P, Schneider M, Schwob P, Small ID, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A
(2005)
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
Nucleic Acids Research
33(Database issue):D641-6.
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2005
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Duchene AM, Giritch A, Hoffmann B, Cognat V, Lancelin D, Peeters NM, Zaepfel M, Marechal-Drouard L, Small ID
(2005)
Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in <i>Arabidopsis thaliana</i>
Proceedings of the National Academy of Sciences of the United States of America
102(45):16484-16489.
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2005
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Förster B, Osmond CB, Pogson BJ
(2005)
Improved survival of very high light and oxidative stress is conferred by spontaneous gain-of-function mutations in Chlamydomonas.
Biochimica et Biophysica Acta - General Subjects
1709(1):45-57.
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2005
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Murcha MW, Rudhe C, Elhafez D, Adams KL, Daley DO, Whelan J
(2005)
Adaptations required for mitochondrial import following mitochondrial to nucleus gene transfer of ribosomal protein S10.
Plant Physiology
138(4):2134-44.
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2005
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Eubel H, Braun HP, Millar AH
(2005)
Blue-native PAGE in plants: a tool in analysis of protein-protein interactions.
Plant Methods
1(1):11.
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2005
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Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH
(2005)
Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis.
Plant Physiology
139(2):598-609.
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2005
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Murcha MW, Millar AH, Whelan J
(2005)
The N-terminal cleavable extension of plant carrier proteins is responsible for efficient insertion into the inner mitochondrial membrane
Journal of Molecular Biology
351(1):16-25.
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2005
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Woodger FJ, Badger MR, Price GD
(2005)
Sensing of inorganic carbon limitation in Synechococcus PCC7942 is correlated with the size of the internal inorganic carbon pool and involves oxygen.
Plant Physiology
139(4):1959-69.
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2004
|
Baier M, Ströher E, Dietz KJ
(2004)
The acceptor availability at photosystem I and ABA control nuclear expression of 2-Cys peroxiredoxin-A in Arabidopsis thaliana.
Plant and Cell Physiology
45(8):997-1006.
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