Year Publication Online
2020
Munns R, Day DA, Fricke W, Watt M, Arsova B, Barkla BJ, Bose J, Byrt CS, Chen ZH, Foster KJ, Gilliham M, Henderson SW, Jenkins CLD, Kronzucker HJ, Miklavcic SJ, Plett D, Roy SJ, Shabala S, Shelden MC, Soole KL, Taylor NL, Tester M, Wege S, Wegner LH, Tyerman SD (2020) Energy costs of salt tolerance in crop plants. The New phytologist 225(3):1072-1090.
NCBI Pubmed DOI Link
2019
Harris KD, Lloyd JPB, Domb K, Zilberman D, Zemach A (2019) DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development Epigenetics and Chromatin 12(1):62.
NCBI Pubmed DOI Link
2019
Flores-Moreno H, Fazayeli F, Banerjee A, Datta A, Kattge J, Butler E, Atkin OK, Wythers K, Chen, M, Anand M, Bahn M, Burrascano S, Byun C, Cornelissen J, Craine J, Gonzalez-Melo A, Hattingh, W, Jansen S, Kraft N, Kramer K, Laughlin D, Minden V, Niinemets Ü, Onipchenko V, Peñuelas J, Soudzilovskaia N, Reich P (2019) Robustness of trait connections between multiple plant organs across environmental gradients and growth forms. Global Ecology and Biogeography 28: 1806-1826.
DOI Link
2019
de Mendoza A, Hatleberg WL, Pang K, Leininger S, Bogdanovic O, Pflueger J, Buckberry S, Technau U, Hejnol A, Adamska M, Degnan BM, Degnan SM, Lister R (2019) Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature ecology & evolution 3(10):1464-1473.
NCBI Pubmed DOI Link
2019
van der Hulst L, Munguia P, Culbert JA, Ford CM, Burton RA, Wilkinson KL (2019) Accumulation of volatile phenol glycoconjugates in grapes following grapevine exposure to smoke and potential mitigation of smoke taint by foliar application of kaolin. Planta 249(3):941-952.
NCBI Pubmed DOI Link
2019
Signorelli S, Shaw J, Hermawaty D, Wang Z, Verboven P, Considine JA, Considine MJ (2019) The initiation of bud burst in grapevine features dynamic regulation of the apoplastic pore size Journal of Experimental Botany 71(2):719-729.
NCBI Pubmed DOI Link
2019
Ward B, Brien C, Oakey H, Pearson A, Negrão S, Schilling RK, Taylor J, Jarvis D, Timmins A, Roy SJ, Tester M, Berger B, van den Hengel A (2019) High-throughput 3D modelling to dissect the genetic control of leaf elongation in barley (Hordeum vulgare). The Plant Journal 98(3):555-570.
NCBI Pubmed DOI Link
2019
Guo Q, Ng PQ, Shi S, Fan D, Li J, Zhao J, Wang H, David R, Mittal P, Do T, Bock R, Zhao M, Zhou W, Searle I (2019) Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth. PLoS ONE 14(11):e0225064.
NCBI Pubmed DOI Link
2019
Wang S, Yokosho K, Guo R, Whelan J, Ruan YL, Ma JF, Shou H (2019) The Soybean Sugar Transporter GmSWEET15 Mediates Sucrose Export from Endosperm to Early Embryo. Plant Physiology 180(4):2133-2141.
NCBI Pubmed DOI Link
2019
Lambers CGPPEHOSOLKWPLCOKAH (2019) Trait convergence in photosynthetic nutrient‐use efficiency along a 2‐million year dune chronosequence in a global biodiversity hotspot Journal of Ecology 107(4): 2006-2023.
DOI Link
2019
Tabares-da Rosa S, Signorelli S, Del Papa M, Sabatini O, Reyno R, Lattanzi F, Rebuffo M, Sanjuán J, Monza J (2019) Rhizobia Inoculants for Alfalfa in Acid Soils: a Proposal for Uruguay Agrociencia
DOI Link
2019
Garcia-Gimenez G, Russell J, Aubert MK, Fincher GB, Burton RA, Waugh R, Tucker MR, Houston K (2019) Barley grain (1,3;1,4)-β-glucan content: effects of transcript and sequence variation in genes encoding the corresponding synthase and endohydrolase enzymes. Scientific Reports 9(1):17250.
NCBI Pubmed DOI Link
2019
Fisher MF, Mylne JS (2019) Sequencing Orbitides by Acid-Mediated Ring Cleavage Followed by Tandem Mass Spectrometry. J. Proteome Research 18(11):4065-4071.
NCBI Pubmed DOI Link
2019
Matros A, Peukert M, Lahnstein J, Burton USAR (2019) Determination of Fructans in Plants: Current Analytical Means for Extraction, Detection, and Quantification Annual Plant Reviews 2(1).
DOI Link
2019
Grubman A, Chew G, Ouyang JF, Sun G, Choo XY, McLean C, Simmons RK, Buckberry S, Vargas-Landin DB, Poppe D, Pflueger J, Lister R, Rackham OJL, Petretto E, Polo JM (2019) A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation. Nature neuroscience 22(12):2087-2097.
NCBI Pubmed DOI Link
2019
Van Moerkercke A, Duncan O, Zander M, Šimura J, Broda M, Vanden Bossche R, Lewsey MG, Lama S, Singh KB, Ljung K, Ecker JR, Goossens A, Millar AH, Van Aken O (2019) A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels. Proceedings of the National Academy of Sciences of the United States of America 116(46):23345-23356.
NCBI Pubmed DOI Link
2019
Lee K, Park SJ, Colas des Francs-Small C, Whitby M, Small I, Kang H (2019) The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts. The Plant Journal 100(6):1193-1207.
NCBI Pubmed DOI Link
2019
Signorelli S, Masclaux-Daubresse C, Moriyasu Y, Van den Ende W, Bassham DC (2019) Editorial: Sugars and Autophagy in Plants Frontiers in Plant Science 10:1190.
NCBI Pubmed DOI Link
2019
Murray KD, Janes JK, Jones A, Bothwell HM, Andrew RL, Borevitz JO (2019) Landscape drivers of genomic diversity and divergence in woodland Eucalyptus. Molecular Ecology 28(24):5232-5247.
NCBI Pubmed DOI Link
2019
Vacher M, Small I (2019) Simulation of heterosis in a genome-scale metabolic network provides mechanistic explanations for increased biomass production rates in hybrid plants. npj Systems Biology and Applications 5():24.
NCBI Pubmed DOI Link
2019
Marzec M, Brewer P (2019) Binding or Hydrolysis? How Does the Strigolactone Receptor Work? Trends in Plant Science 24(7):571-574.
NCBI Pubmed DOI Link
2019
Eichten S, Srivastava A, Reddiex A, Ganguly D, Heussler A, Streich J, Wilson P, Borevitz J (2019) Extending the genotype in Brachypodium by including DNA methylation reveals a joint contribution with genetics on adaptive traits bioRxiv
DOI Link
2019
Hammer, T. A, Zhong, X., Colas des Francs-Small C., Nevill, P. G., Small, I. D., Thiele, K. R. (2019) Resolving intergeneric relationships in the aervoid clade and the backbone of Ptilotus (Amaranthaceae): Evidence from whole plastid genomes and morphology Taxon 68(2): 297-314.
DOI Link
2019
Little A, Lahnstein J, Jeffery DW, Khor SF, Schwerdt JG, Shirley NJ, Hooi M, Xing X, Burton RA, Bulone V (2019) Natural Variation in Ovule Morphology Is Influenced by Multiple Tissues and Impacts Downstream Grain Development in Barley ( <i>Hordeum vulgare</i> L.) ACS central science 5(1):73-84.
NCBI Pubmed DOI Link
2019
Denisenko E, Guo BB, Jones M, Hou R, Kock LD, Lassmann T, Poppe D, Clement O, Simmons RK, Lister R, Forrest AR (2019) Systematic bias assessment in solid tissue 10x scRNA-seq workflows bioRxiv
DOI Link
2019
Watkins JL, Li M, McQuinn RP, Chan KX, McFarlane HE, Ermakova M, Furbank RT, Mares DJ, Dong C, Chalmers KJ, Sharp P, Mather D, Pogson BJ (2019) A GDSL Esterase/Lipase Catalyzes the Esterification of Lutein in Bread Wheat. The Plant Cell 31(12):3092-3112.
NCBI Pubmed DOI Link
2019
Diefenbach RJ, Lee JH, Chandler D, Wang Y, Pflueger C, Long GV, Scolyer RA, Carlino MS, Menzies AM, Kefford RF, Rizos H (2019) Hypermethylation of Circulating Free DNA in Cutaneous Melanoma Applied Sciences (MDPI) 9(23):5074.
DOI Link
2019
Hammer TA, Zhong X, Francs-Small CCD, Nevill PG, Small ID, Thiele KR (2019) Resolving intergeneric relationships in the aervoid clade and the backbone of Ptilotus (Amaranthaceae): evidence from whole plastid genomes and morphology Taxon 68(2): 297-314.
DOI Link
2019
Selinski J, Scheibe R (2019) Malate valves: old shuttles with new perspectives Plant Biology 21: 21-30.
NCBI Pubmed DOI Link
2019
Fisher MF, Payne CD, Rosengren KJ, Mylne JS (2019) An Orbitide from <i>Ratibida columnifera</i> Seed Containing 16 Amino Acid Residues. Journal of Natural Products 82(8):2152-2158.
NCBI Pubmed DOI Link
2019
Asif MA, Pearson AS, Schilling RK, Roy SJ (2019) Opportunities for Developing Salt-tolerant Wheat and Barley Varieties Annual Plant Reviews 2(1).
DOI Link
2019
David R, Kortschak R, Searle I (2019) The root hair defective phenotype of Arabidopsis thaliana Pol IV subunit mutant nrpd1a-3 is associated with a deletion in RHD6 microPublication biology
NCBI Pubmed DOI Link
2019
Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Çebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Stilio VSD, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, García N, Gâteblé G, Godden GT, Goh FQY, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Konrat MV, Könyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li F, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng Y, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlösser E, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN, Stinchcombe JR, Szövényi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang C, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu S, Wulff AS, Yang Y, Zhu D, Zhuang C, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng S, Li J, Li R, Li X, Lu H, Ou Y, Sun X, Tan X, Tang J, Tian Z, Wang F, Wang J, Wei X, Xu X, Yan Z, Yang F, Zhong X, Zhou F, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen N, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong H, Lu-Irving P, Marx HE, Qi X, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu R, Zhan S, Gramzow L, Theißen G, Wong GK (2019) One thousand plant transcriptomes and the phylogenomics of green plants Nature 574(7780):679-685.
NCBI Pubmed DOI Link
2019
Lama S, Broda M, Abbas Z, Vaneechoutte D, Belt K, Säll T, Vandepoele K, Van Aken O (2019) Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants. Molecular Biology and Evolution 36(5):974-989.
NCBI Pubmed DOI Link
2019
Ghifari AS, Huang S, Murcha MW (2019) The peptidases involved in plant mitochondrial protein import. Journal of Experimental Botany 70(21):6005-6018.
NCBI Pubmed DOI Link
2019
Zia SF, Berkowitz O, Bedon F, Whelan J, Franks AE, Plummer KM (2019) Direct comparison of Arabidopsis gene expression reveals different responses to melatonin versus auxin. BMC Plant Biology 19(1):567.
NCBI Pubmed DOI Link
2019
Amarasinghe SL, Watson-Haigh NS, Byrt C, James R, Qiu J, Berkowitz O, Whelan J, Roy SJ, Gilliham M, Baumann U (2019) Transcriptional variation is associated with differences in shoot sodium accumulation in distinct barley varieties Environmental and Experimental Botany 166.
DOI Link
2019
Wilkinson LG, Yang X, Burton RA, Würschum T, Tucker MR (2019) Natural Variation in Ovule Morphology Is Influenced by Multiple Tissues and Impacts Downstream Grain Development in Barley ( <i>Hordeum vulgare</i> L.) Frontiers in Plant Science 10:1374.
NCBI Pubmed DOI Link
2019
Thomas HJD, Myers-Smith IH, Bjorkman AD, Elmendorf SC, Blok D, Cornelissen JHC, Forbes BC, Hollister RD, Normand S, Prevéy JS, Rixen C, Schaepman-Strub G, Wilmking M, Wipf S, Cornwell WK, Kattge J, Goetz SJ, Guay KC, Alatalo JM, Anadon-Rosell A, Angers-Blondin S, Berner LT, Björk RG, Buchwal A, Buras A, Carbognani M, Christie K, Siegwart Collier L, Cooper EJ, Eskelinen A, Frei ER, Grau O, Grogan P, Hallinger M, Heijmans MMPD, Hermanutz L, Hudson JMG, Hülber K, Iturrate-Garcia M, Iversen CM, Jaroszynska F, Johnstone JF, Kaarlejärvi E, Kulonen A, Lamarque LJ, Lévesque E, Little CJ, Michelsen A, Milbau A, Nabe-Nielsen J, Nielsen SS, Ninot JM, Oberbauer SF, Olofsson J, Onipchenko VG, Petraglia A, Rumpf SB, Semenchuk PR, Soudzilovskaia NA, Spasojevic MJ, Speed JDM, Tape KD, Te Beest M, Tomaselli M, Trant A, Treier UA, Venn S, Vowles T, Weijers S, Zamin T, Atkin OK, Bahn M, Blonder B, Campetella G, Cerabolini BEL, Chapin Iii FS, Dainese M, de Vries FT, Díaz S, Green W, Jackson RB, Manning P, Niinemets Ü, Ozinga WA, Peñuelas J, Reich PB, Schamp B, Sheremetev S, van Bodegom PM (2019) Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome. Global ecology and biogeography : a journal of macroecology 28(2):78-95.
NCBI Pubmed DOI Link
2019
Ganguly DR, Stone BAB, Bowerman AF, Eichten SR, Pogson BJ (2019) Excess Light Priming in Arabidopsis thaliana Genotypes with Altered DNA Methylomes G3 9(11):3611-3621.
NCBI Pubmed DOI Link
2019
Ivanova A, Gill-Hille M, Huang S, Branca RM, Kmiec B, Teixeira PF, Lehtiö J, Whelan J, Murcha MW (2019) A Mitochondrial LYR Protein Is Required for Complex I Assembly. Plant Physiology 181(4):1632-1650.
NCBI Pubmed DOI Link
2019
Pflueger C, Swain T, Lister R (2019) Harnessing targeted DNA methylation and demethylation using dCas9. Essays in biochemistry 63(6):813-825.
NCBI Pubmed DOI Link
2019
Fuentes S, Tongson EJ, De Bei R, Gonzalez Viejo C, Ristic R, Tyerman S, Wilkinson K (2019) Non-Invasive Tools to Detect Smoke Contamination in Grapevine Canopies, Berries and Wine: A Remote Sensing and Machine Learning Modeling Approach. Sensors 19(15):3335.
NCBI Pubmed DOI Link
2019
Wurtzel ET, Vickers CE, Hanson AD, Millar AH, Cooper M, Voss-Fels KP, Nikel PI, Erb TJ (2019) Revolutionizing agriculture with synthetic biology. Nature Plants 5(12):1207-1210.
NCBI Pubmed DOI Link
2019
Amthor JS, Bar-Even A, Hanson AD, Millar AH, Stitt M, Sweetlove LJ, Tyerman SD (2019) Engineering Strategies to Boost Crop Productivity by Cutting Respiratory Carbon Loss. The Plant Cell 31(2):297-314.
NCBI Pubmed DOI Link
2019
Huang S, Braun HP, Gawryluk RMR, Millar AH (2019) Mitochondrial complex II of plants: subunit composition, assembly and function in respiration and signaling. The Plant Journal 98(3):405-417.
NCBI Pubmed DOI Link
2019
Tyerman SD, Munns R, Fricke W, Arsova B, Barkla BJ, Bose J, Bramley H, Byrt C, Chen Z, Colmer TD, Cuin T, Day DA, Foster KJ, Gilliham M, Henderson SW, Horie T, Jenkins CLD, Kaiser BN, Katsuhara M, Plett D, Miklavcic SJ, Roy SJ, Rubio F, Shabala S, Shelden M, Soole K, Taylor NL, Tester M, Watt M, Wege S, Wegner LH, Wen Z (2019) Energy costs of salinity tolerance in crop plants. The New phytologist 221(1):25-29.
NCBI Pubmed DOI Link
2019
Nevill PG, Howell KA, Cross AT, Williams AV, Zhong X, Tonti-Filippini J, Boykin LM, Dixon KW, Small I (2019) Plastome-Wide Rearrangements and Gene Losses in Carnivorous Droseraceae. Genome Biology and Evolution 11(2):472-485.
NCBI Pubmed DOI Link
2019
Furci L, Jain R, Stassen J, Berkowitz O, Whelan J, Roquis D, Baillet V, Colot V, Johannes F, Ton J (2019) Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in <i>Arabidopsis</i>. eLIFE 8:.
NCBI Pubmed DOI Link
2019
Millar AH, Heazlewood JL, Giglione C, Holdsworth MJ, Bachmair A, Schulze WX (2019) The Scope, Functions, and Dynamics of Posttranslational Protein Modifications. Annual Review of Plant Biology 70:119-151.
NCBI Pubmed DOI Link
2019
Ryan MH, Kaur P, Nazeri NK, Clode PL, Keeble-Gagnère G, Doolette AL, Smernik RJ, Van Aken O, Nicol D, Maruyama H, Ezawa T, Lambers H, Millar AH, Appels R (2019) Globular structures in roots accumulate phosphorus to extremely high concentrations following phosphorus addition. Plant, Cell & Environment 42(6):1987-2002.
NCBI Pubmed DOI Link
2019
Yadav AK, Carroll AJ, Estavillo GM, Rebetzke GJ, Pogson BJ (2019) Wheat drought tolerance in the field is predicted by amino acid responses to glasshouse-imposed drought. Journal of Experimental Botany 70(18):4931-4948.
NCBI Pubmed DOI Link
2019
Coast O, Shah S, Ivakov A, Gaju O, Wilson PB, Posch BC, Bryant CJ, Negrini ACA, Evans JR, Condon AG, Silva-Pérez V, Reynolds MP, Pogson BJ, Millar AH, Furbank RT, Atkin OK (2019) Predicting dark respiration rates of wheat leaves from hyperspectral reflectance. Plant, Cell & Environment 42(7):2133-2150.
NCBI Pubmed DOI Link
2019
Zhao C, Wang Y, Chan KX, Marchant DB, Franks PJ, Randall D, Tee EE, Chen G, Ramesh S, Phua SY, Zhang B, Hills A, Dai F, Xue D, Gilliham M, Tyerman S, Nevo E, Wu F, Zhang G, Wong GK, Leebens-Mack JH, Melkonian M, Blatt MR, Soltis PS, Soltis DE, Pogson BJ, Chen ZH (2019) Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land. Proceedings of the National Academy of Sciences of the United States of America 116(11):5015-5020.
NCBI Pubmed DOI Link
2019
David R, Byrt CS, Tyerman SD, Gilliham M, Wege S (2019) Roles of membrane transporters: connecting the dots from sequence to phenotype. Annals of Botany 24(16):1517-21.
NCBI Pubmed DOI Link
2019
Domingos P, Dias PN, Tavares B, Portes MT, Wudick MM, Konrad KR, Gilliham M, Bicho A, Feijó JA (2019) Molecular and electrophysiological characterization of anion transport in Arabidopsis thaliana pollen reveals regulatory roles for pH, Ca2+ and GABA The New phytologist 24(16):1469-74.
NCBI Pubmed DOI Link
2019
Richards SM, Hovhannisyan N, Gilliham M, Ingram J, Skadhauge B, Heiniger H, Llamas B, Mitchell KJ, Meachen J, Fincher GB, Austin JJ, Cooper A (2019) Low-cost cross-taxon enrichment of mitochondrial DNA using in-house synthesised RNA probes. PLoS ONE 14(2):e0209499.
NCBI Pubmed DOI Link
2019
Ohbayashi I, Huang S, Fukaki H, Song X, Sun S, Morita MT, Tasaka M, Millar AH, Furutani M (2019) Mitochondrial Pyruvate Dehydrogenase Contributes to Auxin-Regulated Organ Development. Plant Physiology 180(2):896-909.
NCBI Pubmed DOI Link
2019
Watts-Williams SJ, Cavagnaro TR, Tyerman SD (2019) Variable effects of arbuscular mycorrhizal fungal inoculation on physiological and molecular measures of root and stomatal conductance of diverse Medicago truncatula accessions. Plant, Cell & Environment 42(1):285-294.
NCBI Pubmed DOI Link
2019
Srivastava A, Karpievitch YV, Eichten SR, Borevitz JO, Lister R (2019) HOME: a histogram based machine learning approach for effective identification of differentially methylated regions. BMC Bioinformatics 20(1):253.
NCBI Pubmed DOI Link
2019
Posch BC, Kariyawasam BC, Bramley H, Coast O, Richards RA, Reynolds MP, Trethowan R, Atkin OK (2019) Exploring high temperature responses of photosynthesis and respiration to improve heat tolerance in wheat. Journal of Experimental Botany 70(19):5051-5069.
NCBI Pubmed DOI Link
2019
Aspinwall MJ, Pfautsch S, Tjoelker MG, Vårhammar A, Possell M, Drake JE, Reich PB, Tissue DT, Atkin OK, Rymer PD, Dennison S, Van Sluyter SC (2019) Range size and growth temperature influence Eucalyptus species responses to an experimental heatwave. Global change biology 25(5):1665-1684.
NCBI Pubmed DOI Link
2019
Ishibashi K, Small I, Shikanai T (2019) Evolutionary model of plastidial RNA editing in angiosperms presumed from genome-wide analysis of Amborella trichopoda. Plant and Cell Physiology 24(17):1569-72.
NCBI Pubmed DOI Link
2019
Small I (2019) Transplastomic Arabidopsis plants at last. Nature Plants 5(3):249-250.
NCBI Pubmed DOI Link
2019
Munns R, Passioura JB, Colmer TD, Byrt CS (2019) Osmotic adjustment and energy limitations to plant growth in saline soil. The New phytologist 24(16):1469-74.
NCBI Pubmed DOI Link
2019
Li L, Lavell A, Meng X, Berkowitz O, Selinski J, Van De Meene A, Carrie C, Benning C, Whelan J, De Clercq I, Wang Y (2019) Arabidopsis DGD1 SUPPRESSOR1 Is a Subunit of the Mitochondrial Contact Site and Cristae Organizing System and Affects Mitochondrial Biogenesis. The Plant Cell 31(8):1856-1878.
NCBI Pubmed DOI Link
2019
Meng X, Li L, De Clercq I, Narsai R, Xu Y, Hartmann A, Claros DL, Custovic E, Lewsey MG, Whelan J, Berkowitz O (2019) ANAC017 Coordinates Organellar Functions and Stress Responses by Reprogramming Retrograde Signaling. Plant Physiology 180(1):634-653.
NCBI Pubmed DOI Link
2019
Chen B, Yin G, Whelan J, Zhang Z, Xin X, He J, Chen X, Zhang J, Zhou Y, Lu X (2019) Composition of Mitochondrial Complex I during the Critical Node of Seed Aging in Oryza sativa. J. Plant Physiol 236:7-14.
NCBI Pubmed DOI Link
2019
Blanco NE, Liebsch D, Guinea Díaz M, Strand Å, Whelan J (2019) Dual and dynamic intracellular localization of Arabidopsis thaliana SnRK1.1. Journal of Experimental Botany 70(8):2325-2338.
NCBI Pubmed DOI Link
2019
Chevalier F, Cuyas L, Jouhet J, Gros VR, Chiarenza S, Secco D, Whelan J, Seddiki K, Block MA, Nussaume L, Marechal E (2019) Interplay between Jasmonic Acid, Phosphate Signaling and the Regulation of Glycerolipid Homeostasis in Arabidopsis. Plant and Cell Physiology 60(6):1260-1273.
NCBI Pubmed DOI Link
2019
Rivers JY, Truong TT, Pogson BJ, McQuinn RP (2019) Volatile apocarotenoid discovery and quantification in Arabidopsis thaliana: optimized sensitive analysis via HS-SPME-GC/MS. Metabolomics 15(5):79.
NCBI Pubmed DOI Link
2019
Anderson BM, Thiele KR, Grierson PF, Krauss SL, Nevill PG, Small ID, Zhong X, Barrett MD (2019) Recent range expansion in Australian hummock grasses (Triodia) inferred using genotyping-by-sequencing AoB PLANTS 11(2):plz017.
NCBI Pubmed DOI Link
2019
Zhang J, Payne CD, Pouvreau B, Schaefer H, Fisher MF, Taylor NL, Berkowitz O, Whelan J, Rosengren KJ, Mylne JS (2019) An Ancient Peptide Family Buried within Vicilin Precursors. ACS chemical biology 14(5):979-993.
NCBI Pubmed DOI Link
2019
Chiconato DA, da Silveira Sousa Junior G, dos Santos DMM, Munns R (2019) Adaptation of sugarcane plants to saline soil. Environmental and Experimental Botany 162:201-211.
DOI Link
2019
Mujeeb-Kazi A, Munns R, Rasheed A, Ogbonnaya FC, Ali N, Hollington P, Dundas I, Saeed N, Wang R, Rengasamy P, Saddiq MS, de Leon JLD, Ashraf M, Rajaram S (2019) Breeding strategies for structuring salinity tolerance in wheat. Advances in Agronomy 155: 121-187.
DOI Link
2019
Skvortsova K, Tarbashevich K, Stehling M, Lister R, Irimia M, Raz E, Bogdanovic O (2019) Retention of paternal DNA methylome in the developing zebrafish germline. Nature Communications 10(1):3054.
NCBI Pubmed DOI Link
2019
de Mendoza A, Pflueger J, Lister R (2019) Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family. Genome Research 29(8):1277-1286.
NCBI Pubmed DOI Link
2019
Sanchez-Luque FJ, Kempen MHC, Gerdes P, Vargas-Landin DB, Richardson SR, Troskie RL, Jesuadian JS, Cheetham SW, Carreira PE, Salvador-Palomeque C, García-Cañadas M, Muñoz-Lopez M, Sanchez L, Lundberg M, Macia A, Heras SR, Brennan PM, Lister R, Garcia-Perez JL, Ewing AD, Faulkner GJ (2019) LINE-1 Evasion of Epigenetic Repression in Humans. Molecular Cell 75(3):590-604.e12.
NCBI Pubmed DOI Link
2019
Watts-Williams SJ, Smith FA, Jakobsen I (2019) Soil phosphorus availability is a driver of the responses of maize (Zea mays) to elevated CO2 concentration and arbuscular mycorrhizal colonisation Symbiosis 77:73–82.
DOI Link
2019
Watts-Williams SJ, Emmett BD, Levesque-Tremblay V, MacLean AM, Sun X, Satterlee JW, Fei Z, Harrison MJ (2019) Diverse Sorghum bicolor accessions show marked variation in growth and transcriptional responses to arbuscular mycorrhizal fungi Plant, Cell & Environment 42(5).
NCBI Pubmed DOI Link
2019
James AM, Haywood J, Leroux J, Ignasiak K, Elliott AG, Schmidberger JW, Fisher MF, Nonis SG, Fenske R, Bond CS, Mylne JS (2019) The macrocyclizing protease butelase 1 remains autocatalytic and reveals the structural basis for ligase activity. The Plant Journal 98(6):988-999.
NCBI Pubmed DOI Link
2019
Dosselli R, Grassl J, den Boer SPA, Kratz M, Moran JM, Boomsma JJ, Baer B (2019) Protein-Level Interactions as Mediators of Sexual Conflict in Ants. Molecular and Cellular Proteomics 18(Suppl 1):S34-S45.
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2019
Osorio MB, Ng S, Berkowitz O, De Clercq I, Mao C, Shou H, Whelan J, Jost R (2019) SPX4 Acts on PHR1-Dependent and -Independent Regulation of Shoot Phosphorus Status in Arabidopsis. Plant Physiology 181(1):332-352.
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2019
Coetzee ZA, Walker RR, Liao S, Barril C, Deloire AJ, Clarke SJ, Tyerman SD, Rogiers SY (2019) Expression Patterns of Genes Encoding Sugar and Potassium Transport Proteins are Simultaneously Up- or Downregulated When Carbon and Potassium Availability is Modified in Shiraz (Vitis vinifera L.) Berries. Plant and Cell Physiology 60(10):2331-2342.
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2019
Dechorgnat J, Francis KL, Dhugga KS, Rafalski JA, Tyerman SD, Kaiser BN (2019) Tissue and nitrogen-linked expression profiles of ammonium and nitrate transporters in maize. BMC Plant Biology 19(1):206.
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2019
Cao S, Xiao Z, Jiranek V, Tyerman SD (2019) The VvBAP1 gene is identified as a potential inhibitor of cell death in grape berries. Functional Plant Biology 46(5):428-442.
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2019
Rungrat T, Almonte AA, Cheng R, Gollan PJ, Stuart T, Aro EM, Borevitz JO, Pogson B, Wilson PB (2019) A Genome-Wide Association Study of Non-Photochemical Quenching in response to local seasonal climates in <i>Arabidopsis thaliana</i>. Plant Direct 3(5):e00138.
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2019
von Takach Dukai B, Jack C, Borevitz J, Lindenmayer DB, Banks SC (2019) Pervasive admixture between eucalypt species has consequences for conservation and assisted migration. Evolutionary Applications 12(4):845-860.
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2019
Kerbler SM, Taylor NL, Millar AH (2019) Cold sensitivity of mitochondrial ATP synthase restricts oxidative phosphorylation in Arabidopsis thaliana. The New phytologist 221(4):1776-1788.
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2019
Ruwe H, Gutmann B, Schmitz-Linneweber C, Small I, Kindgren P (2019) The E-domain of CRR2 participates in sequence-specific recognition of RNA in plastids. The New phytologist 222(1):218-229.
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2019
Melonek J, Zhou R, Bayer PE, Edwards D, Stein N, Small I (2019) High intraspecific diversity of Restorer-of-fertility-like genes in barley. The Plant Journal 97(2):281-295.
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2019
O'Leary BM, Asao S, Harvey Millar AH, Atkin OK (2019) Core principles which explain variation in respiration across biological scales. The New phytologist 222(2):670-686.
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2019
Bloomfield KJ, Prentice IC, Cernusak LA, Eamus D, Medlyn BE, Rumman R, Wright IJ, Boer MM, Cale P, Cleverly J, Egerton JJG, Ellsworth DS, Evans BJ, Hayes LS, Hutchinson MF, Liddell MJ, Macfarlane C, Meyer WS, Togashi HF, Wardlaw T, Zhu L, Atkin OK (2019) The validity of optimal leaf traits modelled on environmental conditions. The New phytologist 221(3):1409-1423.
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2019
Shadmany M, Boykin LM, Muhamad R, Omar D (2019) Genetic Diversity of Bemisia tabaci (Hemiptera: Aleyrodidae) Species Complex Across Malaysia. Journal of Economic Entomology 112(1):75-84.
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2019
Eriksson D, Kershen D, Nepomuceno A, Pogson BJ, Prieto H, Purnhagen K, Smyth S, Wesseler J, Whelan A (2019) A comparison of the EU regulatory approach to directed mutagenesis with that of other jurisdictions, consequences for international trade and potential steps forward. The New phytologist 222(4):1673-1684.
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2019
Wilson PB, Streich JC, Murray KD, Eichten SR, Cheng R, Aitken NC, Spokas K, Warthmann N, Gordon SP, Contributors A, Vogel JP, Borevitz JO (2019) Global Diversity of the Brachypodium Species Complex as a Resource for Genome Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate. GENETICS 211(1):317-331.
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2019
Sanchez-Puerta MV, Edera A, Gandini CL, Williams AV, Howell KA, Nevill PG, Small I (2019) Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae). Molecular Phylogenetics and Evolution 132:243-250.
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2019
Xu Y, Berkowitz O, Narsai R, De Clercq I, Hooi M, Bulone V, Van Breusegem F, Whelan J, Wang Y (2019) Mitochondrial function modulates touch signalling in Arabidopsis thaliana. The Plant Journal 97(4):623-645.
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2018
Drake JE, Tjoelker MG, Vårhammar A, Medlyn BE, Reich PB, Leigh A, Pfautsch S, Blackman CJ, López R, Aspinwall MJ, Crous KY, Duursma RA, Kumarathunge D, De Kauwe MG, Jiang M, Nicotra AB, Tissue DT, Choat B, Atkin OK, Barton CVM (2018) Trees Tolerate an Extreme Heatwave via Sustained Transpirational Cooling and Increased Leaf Thermal Tolerance. Global change biology 24(6):2390-2402.
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O'Leary B, Plaxton W (2018) Mechanisms and Functions of Post-translational Enzyme Modifications in the Organization and Control of Plant Respiratory Metabolism BOOK Book chapter: O’Leary B.M., Plaxton W.C. (2017) Mechanisms and Functions of Post-translational Enzyme Modifications in the Organization and Control of Plant Respiratory Metabolism. In: Tcherkez G., Ghashghaie J. (eds) Plant Respiration: Metabolic Fluxes and Carbon Balance. Advances in Photosynthesis and Respiration (Including Bioenergy and Related Processes), vol 43. Springer, Cham.
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Stassen JHM, López A, Jain R, Pascual-Pardo D, Luna E, Smith LM, Ton J (2018) The relationship between transgenerational acquired resistance and global DNA methylation in Arabidopsis Scientific Reports 8(1):14761.
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Waszczak C, Carmody M, Kangasjarvi J (2018) Reactive Oxygen Species in Plant Signaling Annual Review of Plant Biology 69:209-236.
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Honkanen S, Thamm A, Arteaga-Vazquez MA, Dolan L (2018) Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants eLIFE 7:e38529.
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Broda M, Van Aken O (2018) Studying Retrograde Signaling in Plants Methods in Molecular Biology 1743:73-85.
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Zhu L, Bloomfield KJ, Hocart CH, Egerton JJG, O'Sullivan OS, Penillard A, Weerasinghe LK, Atkin OK (2018) Plasticity of photosynthetic heat tolerance in plants adapted to thermally contrasting biomes. Global change biology 41(6):1251-1262.
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2018
Henderson SW, Wege S, Gilliham M (2018) Plant Cation-Chloride Cotransporters (CCC): Evolutionary Origins and Functional Insights. International Journal of Molecular Sciences 19(2).
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2018
Broda M, Millar AH, Van Aken O (2018) Mitophagy: A Mechanism for Plant Growth and Survival. Trends in Plant Science 23(5):434-450.
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2018
de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Hong F, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R (2018) Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature Communications 9(1):1341.
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Stuart T, Buckberry S, Lister R (2018) Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data. Methods in Molecular Biology 1767:299-310.
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Vargas-Landin DB, Pflüger J, Lister R (2018) Generation of Whole Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis. Methods in Molecular Biology 1767():291-298.
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Bahar NHA, Hayes L, Scafaro AP, Atkin OK, Evans JR (2018) Mesophyll conductance does not contribute to greater photosynthetic rate per unit nitrogen in temperate compared with tropical evergreen wet-forest tree leaves. The New phytologist 218(2):492-505.
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Ramesh SA, Kamran M, Sullivan W, Chirkova L, Okamoto M, Degryse F, McLauchlin M, Gilliham M, Tyerman SD (2018) Aluminium-Activated Malate Transporters Can Facilitate GABA Transport. The Plant Cell 30(5):1147-1164.
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Byrt CS, Munns R, Burton RA, Gilliham M, Wege S (2018) Root cell wall solutions for crop plants in saline soils. Plant Science 269:47-55.
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2018
Macfadyen S, Paull C, Boykin LM, De Barro P, Maruthi MN, Otim M, Kalyebi A, Vassão DG, Sseruwagi P, Tay WT, Delatte H, Seguni Z, Colvin J, Omongo CA (2018) Cassava whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) in East African farming landscapes: a review of the factors determining abundance. Bulletin of Entomological Research 108(5):565-582.
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2018
Hanchi M, Thibaud MC, Légeret B, Kuwata K, Pochon N, Beisson F, Cao A, Cuyas L, David P, Doerner P, Ferjani A, Lai F, Li-Beisson Y, Mutterer J, Philibert M, Raghothama KG, Rivasseau C, Secco D, Whelan J, Nussaume L, Javot H (2018) The Phosphate Fast-Responsive Genes <i>PECP1</i> and <i>PPsPase1</i> Affect Phosphocholine and Phosphoethanolamine Content. Plant Physiology 176(4):2943-2962.
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Wang Y, Berkowitz O, Selinski J, Xu Y, Hartmann A, Whelan J (2018) Stress responsive mitochondrial proteins in Arabidopsis thaliana. Free Radical Biology & Medicine 122:28-39.
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2018
Belt K, Van Aken O, Murcha MW, Millar AH, Huang S (2018) An assembly factor promotes assembly of flavinated SDH1 into the succinate dehydrogenase complex. Plant Physiology 177(4):1439-1452.
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2018
Li L, Aro EM, Millar AH (2018) Mechanisms of Photodamage and Protein Turnover in Photoinhibition. Trends in Plant Science 23(8):667-676.
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2018
Huang S, Shingaki-Wells RN, Petereit J, Alexova R, Millar AH (2018) Temperature-dependent metabolic adaptation of Triticum aestivum seedlings to anoxia. Scientific Reports 8(1):6151.
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2018
Ganguly DR, Crisp PA, Eichten SR, Pogson BJ (2018) Maintenance of pre-existing DNA methylation states through recurring excess-light stress. Plant, Cell & Environment 41(7):1657-1672.
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Dechorgnat J, Francis KL, Dhugga KS, Rafalski JA, Tyerman SD, Kaiser BN (2018) Root Ideotype Influences Nitrogen Transport and Assimilation in Maize. Frontiers in Plant Science 9():531.
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2018
Xiao Z, Rogiers SY, Sadras VO, Tyerman SD (2018) Hypoxia in grape berries: the role of seed respiration and lenticels on the berry pedicel and the possible link to cell death. Journal of Experimental Botany 69(8):2071-2083.
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2018
Pflueger C, Tan D, Swain T, Nguyen T, Pflueger J, Nefzger C, Polo JM, Ford E, Lister R (2018) A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs. Genome Research 28(8):1193-1206.
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2018
Li FW, Brouwer P, Carretero-Paulet L, Cheng S, De Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, Depamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, Mcdowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van De Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM (2018) Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants 4(7):460-472.
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2018
Mader M, Pakull B, Blanc-Jolivet C, Paulini-Drewes M, Bouda ZH, Degen B, Small I, Kersten B (2018) Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses. International Journal of Molecular Sciences 19(3).
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2018
Murray KD, Borevitz JO (2018) Axe: rapid, competitive sequence read demultiplexing using a trie. Bioinformatics 34(22):3924-3925.
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2018
Almonte AA, Borevitz JO (2018) Adaptation genomics: The angel is in the details. Plant, Cell & Environment 41(10):2244-2246.
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2018
Supple MA, Bragg JG, Broadhurst LM, Nicotra AB, Byrne M, Andrew RL, Widdup A, Aitken NC, Borevitz JO (2018) Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change eLIFE 7:e31835.
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2018
Selinski J, Scheibe R, Day DA, Whelan J (2018) Alternative Oxidase Is Positive for Plant Performance. Trends in Plant Science 23(7):588-597.
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2018
Han Y, Yin S, Huang L, Wu X, Zeng J, Liu X, Qiu L, Munns R, Chen ZH, Zhang G (2018) A Sodium Transporter HvHKT1;1 Confers Salt Tolerance in Barley via Regulating Tissue and Cell Ion Homeostasis. Plant and Cell Physiology 59(10):1976-1989.
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2018
Szappanos HC, Muralidharan P, Ingley E, Petereit J, Millar AH, Hool LC (2018) Author Correction: Identification of a novel cAMP dependent protein kinase A phosphorylation site on the human cardiac calcium channel. Scientific Reports 8(1):7207.
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2018
de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Li H, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R (2018) Author Correction: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature Communications 9(1):1811.
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2018
Sun YK, Gutmann B, Yap A, Kindgren P, Small I (2018) Editing of Chloroplast <i>rps14</i> by PPR Editing Factor EMB2261 Is Essential for <i>Arabidopsis</i> Development. Frontiers in Plant Science 9:841.
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2018
Yao J, Mashiguchi K, Scaffidi A, Akatsu T, Melville KT, Morita R, Morimoto Y, Smith SM, Seto Y, Flematti GR, Yamaguchi S, Waters MT (2018) An allelic series at the KARRIKIN INSENSITIVE 2 locus of Arabidopsis thaliana decouples ligand hydrolysis and receptor degradation from downstream signalling. The Plant Journal 96(1):75-89.
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2018
Wang L, Waters MT, Smith SM (2018) Karrikin-KAI2 signalling provides Arabidopsis seeds with tolerance to abiotic stress and inhibits germination under conditions unfavourable to seedling establishment. The New phytologist 219(2):605-618.
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2018
Ghifari AS, Gill-Hille M, Murcha MW (2018) Plant mitochondrial protein import: the ins and outs. Biochemical Journal 475(13):2191-2208.
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Corral MG, Haywood J, Stehl LH, Stubbs KA, Murcha MW, Mylne JS (2018) Targeting plant DIHYDROFOLATE REDUCTASE with antifolates and mechanisms for genetic resistance. The Plant Journal (in press).
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2018
Lyu W, Selinski J, Li L, Day DA, Murcha MW, Whelan J, Wang Y (2018) Isolation and Respiratory Measurements of Mitochondria from Arabidopsis thaliana. Journal of Visualized Experiments (131):.
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2018
Franke B, Mylne JS, Rosengren KJ (2018) Buried treasure: biosynthesis, structures and applications of cyclic peptides hidden in seed storage albumins. Natural Product Reports 35(2):137-146.
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Corral MG, Leroux J, Tresch S, Newton T, Stubbs KA, Mylne JS (2018) A herbicide structure-activity analysis of the antimalarial lead compound MMV007978 against Arabidopsis thaliana. Pest Management Science 74(7):1558-1563.
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James AM, Haywood J, Mylne JS (2018) Macrocyclization by asparaginyl endopeptidases. The New phytologist 218(3):923-928.
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Taghavi Namin S, Esmaeilzadeh M, Najafi M, Brown TB, Borevitz JO (2018) Deep phenotyping: deep learning for temporal phenotype/genotype classification. Plant Methods 14():66.
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2018
Asif MA, Schilling RK, Tilbrook J, Brien C, Dowling K, Rabie H, Short L, Trittermann C, Garcia A, Barrett-Lennard EG, Berger B, Mather DE, Gilliham M, Fleury D, Tester M, Roy SJ, Pearson AS (2018) Mapping of novel salt tolerance QTL in an Excalibur × Kukri doubled haploid wheat population. Theoretical and Applied Genetics 131(10):2179-2196.
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2018
Rossitto De Marchi B, Kinene T, Mbora Wainaina J, Krause-Sakate R, Boykin L (2018) Comparative transcriptome analysis reveals genetic diversity in the endosymbiont Hamiltonella between native and exotic populations of Bemisia tabaci from Brazil. PLoS ONE 13(7):e0201411.
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Wainaina JM, Ateka E, Makori T, Kehoe MA, Boykin LM (2018) Phylogenomic relationship and evolutionary insights of sweet potato viruses from the western highlands of Kenya. Peerj 6:e5254.
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2018
Wainaina JM, De Barro P, Kubatko L, Kehoe MA, Harvey J, Karanja D, Boykin LM (2018) Global phylogenetic relationships, population structure and gene flow estimation of Trialeurodes vaporariorum (Greenhouse whitefly). Bulletin of Entomological Research 108(1):5-13.
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2018
Wang D, Gu J, David R, Wang Z, Yang S, Searle IR, Zhu JK, Timmis JN (2018) Experimental reconstruction of double-stranded break repair-mediated plastid DNA insertion into the tobacco nucleus. The Plant Journal 93(2):227-234.
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2018
Phua SY, Pornsiriwong W, Chan KX, Estavillo GM, Pogson BJ (2018) Development of strategies for genetic manipulation and fine-tuning of a chloroplast retrograde signal 3'-phosphoadenosine 5'-phosphate. Plant Direct 2(1):e00031.
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Opalińska M, Parys K, Murcha MW, Jańska H (2018) The plant i-AAA protease controls the turnover of an essential mitochondrial protein import component. Journal of Cell Science 131(2). pii: jcs200733.
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2018
Crisp PA, Smith AB, Ganguly DR, Murray KD, Eichten SR, Millar AA, Pogson BJ (2018) RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling. Plant Physiology 178(4):1614-1630.
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2018
Dubreuil C, Jin X, Barajas-López JD, Hewitt TH, Tanz S, Dobrenel T, Schröder W, Hanson J, Pesquet E, Grönlund A, Small ID, Strand A (2018) Establishment of photosynthesis is controlled by two distinct regulatory phases. Plant Physiology 176(2):1199-1214.
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2018
Phua SY, Yan D, Chan KX, Estavillo GM, Nambara E, Pogson BJ (2018) The <i>Arabidopsis</i> SAL1-PAP Pathway: A Case Study for Integrating Chloroplast Retrograde, Light and Hormonal Signaling in Modulating Plant Growth and Development? Frontiers in Plant Science 9:1171.
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Hrmova M, Gilliham M (2018) Plants fighting back: to transport or not to transport, this is a structural question. Current Opinion in Plant Biology 46():68-76.
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de Moraes LA, Muller C, Bueno RCOF, Santos A, Bello VH, De Marchi BR, Watanabe LFM, Marubayashi JM, Santos BR, Yuki VA, Takada HM, de Barros DR, Neves CG, da Silva FN, Gonçalves MJ, Ghanim M, Boykin L, Pavan MA, Krause-Sakate R (2018) Distribution and phylogenetics of whiteflies and their endosymbiont relationships after the Mediterranean species invasion in Brazil. Scientific Reports 8(1):14589.
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Dong C, He F, Berkowitz O, Liu J, Cao P, Tang M, Shi H, Wang W, Li Q, Shen Z, Whelan J, Zheng L (2018) Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<i>Oryza sativa</i>). The Plant Cell 30(10):2267-2285.
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Kmiec B, Branca RMM, Berkowitz O, Li L, Wang Y, Murcha MW, Whelan J, Lehtiö J, Glaser E, Teixeira PF (2018) Accumulation of endogenous peptides triggers a pathogen stress response in Arabidopsis thaliana. The Plant Journal 96(4):705-715.
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Lloyd JPB, Lang D, Zimmer AD, Causier B, Reski R, Davies B (2018) The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens. Global change biology 46(11):5822-5836.
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Lloyd JPB (2018) The evolution and diversity of the nonsense-mediated mRNA decay pathway. F1000Research 7():1299.
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Watts-Williams SJ, Cavagnaro TR (2018) Arbuscular mycorrhizal fungi increase grain zinc concentration and modify the expression of root ZIP transporter genes in a modern barley (Hordeum vulgare) cultivar. Plant Science 274():163-170.
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Colas Des Francs-Small C, Vincis Pereira Sanglard L, Small I (2018) Targeted cleavage of <i>nad6</i> mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria. Communications Biology 1():166.
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Svenningsen NB, Watts-Williams SJ, Joner EJ, Battini F, Efthymiou A, Cruz-Paredes C, Nybroe O, Jakobsen I (2018) Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota. The ISME Journal 12(5):1296-1307.
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Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, De La Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, Van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M (2018) Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature 564(7734):64-70.
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Wu D, Liang W, Zhu W, Chen M, Ferrándiz C, Burton RA, Dreni L, Zhang D (2018) Loss of LOFSEP Transcription Factor Function Converts Spikelet to Leaf-Like Structures in Rice. Plant Physiology 176(2):1646-1664.
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Rodríguez-Calcerrada J, Rodrigues AM, Perdiguero P, António C, Atkin OK, Li M, Collada C, Gil L (2018) A molecular approach to drought-induced reduction in leaf CO2 exchange in drought-resistant Quercus ilex. Physiologia Plantarum 162(4):394-408.
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Lim WL, Collins HM, Singh RR, Kibble NAJ, Yap K, Taylor J, Fincher GB, Burton RA (2018) Method for hull-less barley transformation and manipulation of grain mixed-linkage beta-glucan. Journal of Integrative Plant Biology 60(5):382-396.
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2018
Wood JA, Tan HT, Collins HM, Yap K, Khor SF, Lim WL, Xing X, Bulone V, Burton RA, Fincher GB, Tucker MR (2018) Genetic and environmental factors contribute to variation in cell wall composition in mature desi chickpea (Cicer arietinum L.) cotyledons. Plant, Cell & Environment 41(9):2195-2208.
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Roberts AW, Lahnstein J, Hsieh YSY, Xing X, Yap K, Chaves AM, Scavuzzo-Duggan TR, Dimitroff G, Lonsdale A, Roberts E, Bulone V, Fincher GB, Doblin MS, Bacic A, Burton RA (2018) Functional Characterization of a Glycosyltransferase from the Moss Physcomitrella patens Involved in the Biosynthesis of a Novel Cell Wall Arabinoglucan The Plant Cell 30(6):1293-1308.
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Little A, Schwerdt JG, Shirley NJ, Khor SF, Neumann K, O'Donovan LA, Lahnstein J, Collins HM, Henderson M, Fincher GB, Burton RA (2018) Revised Phylogeny of the Cellulose Synthase Gene Superfamily: Insights into Cell Wall Evolution Plant Physiology 177(3):1124-1141.
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Aubert MK, Coventry S, Shirley NJ, Betts NS, Würschum T, Burton RA, Tucker MR (2018) Differences in hydrolytic enzyme activity accompany natural variation in mature aleurone morphology in barley (Hordeum vulgare L.). Scientific Reports 8(1):11025.
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2018
Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA, Stein N, Mascher M, Himmelbach A, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M, Lang D, Spannagl M, Appels R, Fischer I, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J, Tiwari V, Gill B, Paux E, Poland J, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J, Sourdille P, Darrier B, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V, Barabaschi D, Cattivelli L, Hernandez P, Galvez S, Budak H, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G, Small I, Melonek J, Zhou R, Juhász A, Belova T, Appels R, Olsen OA, Kanyuka K, King R, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D, Rohde A, Golds T, Doležel J, Čížková J, Tibbits J, Budak H, Akpinar BA, Biyiklioglu S, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J, Berges H, Bellec A, Vautrin S, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P, Gill B, Kaur G, Luo M, Sehgal S, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S, Gill B, Kaur G, Luo M, Sehgal S, Bartoš J, Holušová K, Plíhal O, Clark MD, Heavens D, Kettleborough G, Wright J, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science 361(6403).
NCBI Pubmed DOI Link
2018
Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C (2018) The transcriptional landscape of polyploid wheat. Science 361(6403).
NCBI Pubmed DOI Link
2018
Xu B, Waters S, Byrt CS, Plett D, Tyerman SD, Tester M, Munns R, Hrmova M, Gilliham M (2018) Structural variations in wheat HKT1;5 underpin differences in Na+ transport capacity. Cellular and Molecular Life Sciences 75(6):1133-1144.
NCBI Pubmed DOI Link
2018
Robinson AJ, Tamiru M, Salby R, Bolitho C, Williams A, Huggard S, Fisch E, Unsworth K, Whelan J, Lewsey MG (2018) AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species. BMC Plant Biology 18(1):200.
NCBI Pubmed DOI Link
2018
Henderson SW, Dunlevy JD, Wu Y, Blackmore DH, Walker RR, Edwards EJ, Gilliham M, Walker AR (2018) Functional differences in transport properties of natural HKT1;1 variants influence shoot Na+ exclusion in grapevine rootstocks. The New phytologist 217(3):1113-1127.
NCBI Pubmed DOI Link
2018
Kawasaki A, Okada S, Zhang C, Delhaize E, Mathesius U, Richardson AE, Watt M, Gilliham M, Ryan PR (2018) A sterile hydroponic system for characterising root exudates from specific root types and whole-root systems of large crop plants. Plant Methods 14():114.
NCBI Pubmed DOI Link
2018
Fisher MF, Zhang J, Taylor NL, Howard MJ, Berkowitz O, Debowski AW, Behsaz B, Whelan J, Pevzner PA, Mylne JS (2018) A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch. Plant Direct 2(2):.
NCBI Pubmed DOI Link
2018
Liang LL, Arcus VL, Heskel MA, O'Sullivan OS, Weerasinghe LK, Creek D, Egerton JJG, Tjoelker MG, Atkin OK, Schipper LA (2018) Macromolecular rate theory (MMRT) provides a thermodynamics rationale to underpin the convergent temperature response in plant leaf respiration. Global change biology 24(4):1538-1547.
NCBI Pubmed DOI Link
2018
Rumman R, Atkin OK, Bloomfield KJ, Eamus D (2018) Variation in bulk-leaf 13 C discrimination, leaf traits and water-use efficiency-trait relationships along a continental-scale climate gradient in Australia. Global change biology 24(3):1186-1200.
NCBI Pubmed DOI Link
2018
Grassl J, Holt S, Cremen N, Peso M, Hahne D, Baer B (2018) Synergistic effects of pathogen and pesticide exposure on honey bee (Apis mellifera) survival and immunity. Journal of Invertebrate Pathology 159:78-86.
NCBI Pubmed DOI Link
2018
Selinski J, Hartmann A, Deckers-Hebestreit G, Day DA, Whelan J, Scheibe R (2018) Alternative Oxidase Isoforms Are Differentially Activated by Tricarboxylic Acid Cycle Intermediates. Plant Physiology 176(2):1423-1432.
NCBI Pubmed DOI Link
2017
Cheng R, Doerge RW, Borevitz J (2017) Novel Resampling Improves Statistical Power for Multiple-Trait QTL Mapping. G3 7(3):813-822.
NCBI Pubmed DOI Link
2017
Rubenach AJ, Hecht V, Vander Schoor JK, Liew LC, Aubert G, Burstin J, Weller JL (2017) EARLY FLOWERING3 Redundancy Fine-Tunes Photoperiod Sensitivity Plant Physiology 173(4):2253-2264.
NCBI Pubmed DOI Link
2017
Nelson MN, Książkiewicz M, Rychel S, Besharat N, Taylor CM, Wyrwa K, Jost R, Erskine W, Cowling WA, Berger JD, Batley J, Weller JL, Naganowska B, Wolko B (2017) The loss of vernalization requirement in narrow-leafed lupin is associated with a deletion in the promoter and de-repressed expression of a Flowering Locus T (FT) homologue The New phytologist 213(1):220-232.
NCBI Pubmed DOI Link
2017
Kerbler SM, Taylor NL (2017) Isolation of Mitochondria from Model and Crop Plants Methods in Molecular Biology 1670:115-142.
NCBI Pubmed DOI Link
2017
Teixeira PF, Kmiec B, Branca RM, Murcha MW, Byzia A, Ivanova A, Whelan J, Drag M, Lehtiö J, Glaser E (2017) A multi-step peptidolytic cascade for amino acid recovery in chloroplasts. Nature Chemical Biology 13(1):15-17.
NCBI Pubmed DOI Link
2017
Lehniger MK, Finster S, Melonek J, Oetke S, Krupinska K, Schmitz-Linneweber C (2017) Global RNA association with the transcriptionally active chromosome of chloroplasts Plant Molecular Biology Plant Mol Biol.
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2017
Xu Y, Li SF, Parish RW (2017) Regulation of gene expression by manipulating transcriptional repressor activity using a novel CoSRI technology Plant Biotechnology Journal 15(7):879-893.
NCBI Pubmed DOI Link
2017
Behera S, Long Y, Schmitz-Thom I, Wang XP, Zhang C, Li H, Steinhorst L, Manishankar P, Ren XL, Offenborn JN, Wu WH, Kudla J, Wang Y (2017) Two spatially and temporally distinct Ca(2+) signals convey Arabidopsis thaliana responses to K(+) deficiency. The New phytologist 213(2):739-750.
NCBI Pubmed DOI Link
2017
Paynter E, Millar AH, Welch M, Baer-Imhoof B, Cao D, Baer B (2017) Insights into the molecular basis of long-term storage and survival of sperm in the honeybee (Apis mellifera). Scientific Reports 7:40236.
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2017
Sykes T, Yates S, Nagy I, Asp T, Small I, Studer B (2017) In-silico identification of candidate genes for fertility restoration in cytoplasmic male sterile perennial ryegrass (Lolium perenne L.). Genome Biology and Evolution 9(2):351-362.
NCBI Pubmed DOI Link
2017
Pružinská A, Shindo T, Niessen S, Kaschani F, Tóth R, Millar AH, van der Hoorn RA (2017) Major Cys protease activities are not essential for senescence in individually darkened Arabidopsis leaves. BMC Plant Biology 17(1):4.
NCBI Pubmed DOI Link
2017
Li L, Millar AH, Huang S (2017) Mitochondrial Lon1 has a role in homeostasis of the mitochondrial ribosome and pentatricopeptide repeat proteins in plants. Plant Signaling and Behavior 12(2):e1276686.
NCBI Pubmed DOI Link
2017
Hooper CM, Castleden IR, Tanz SK, Aryamanesh N, Millar AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations. Nucleic Acids Research 45(D1):D1064-D1074.
NCBI Pubmed DOI Link
2017
Duncan O, Millar AH, Taylor NL (2017) Isolation of Mitochondria, Their Sub-Organellar Compartments, and Membranes. Methods in Molecular Biology 1511:83-96.
NCBI Pubmed DOI Link
2017
Millar AH, Taylor NL (2017) The Isolation of Plant Organelles and Structures in the Post-genomic Era. Methods in Molecular Biology 1511:1-11.
NCBI Pubmed DOI Link
2017
Li B, Tester M, Gilliham M (2017) Chloride on the Move. Trends in Plant Science 22(3):236-248.
NCBI Pubmed DOI Link
2017
Yin G, Xin X, Fu S, An M, Wu S, Chen X, Zhang J, He J, Whelan J, Lu X (2017) Proteomic and Carbonylation Profile Analysis at the Critical Node of Seed Ageing in Oryza sativa. Scientific Reports 7:40611.
NCBI Pubmed DOI Link
2017
Ying Y, Yue W, Wang S, Li S, Wang M, Zhao Y, Wang C, Mao C, Whelan J, Shou H (2017) Two h-Type Thioredoxins Interact with the E2 Ubiquitin Conjugase PHO2 to Fine-Tune Phosphate Homeostasis in Rice. Plant Physiology 173(1):812-824.
NCBI Pubmed DOI Link
2017
Khan AL, Waqas M, Asaf S, Kamran M, Shahzad R, Bilal S, Khan MA, Kang S, Kim Y, Yun B, Al-Rawahi A, Al-Harrasi A, Lee I (2017) Plant growth-promoting endophyte Sphingomonas sp. LK11 alleviates salinity stress in Solanum pimpinellifolium Environmental and Experimental Botany 133:58-69.
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2017
Buckberry S, Bianco-Miotto T, Bent SJ, Clifton V, Shoubridge C, Shankar K, Roberts CT (2017) Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation. BMC Genomics 18(1):10.
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